Resource
| Id | Histone_ChIP-seq/ENCSR000DQT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQT [biosample_summary="Homo sapiens GM06990" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN557QLD|/analyses/ENCAN557QLD/} has in progress subobject document {30fb284e-e910-467a-94a4-8b97bbcc204a|/documents/30fb284e-e910-467a-94a4-8b97bbcc204a/} audit_internal_action: Released analysis {ENCAN557QLD|/analyses/ENCAN557QLD/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF132QCV|/files/ENCFF132QCV/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13919524 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF810IOI|/files/ENCFF810IOI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13944340 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQT | float |
Histone_ChIP-seq_ENCSR000DQT |
Histone_ChIP-seq ENCSR000DQT [biosample_summary="Homo sapiens GM06990" and target="H3K36me3"]
|
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[2.02, 12.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33040646 | 1.03% | 104606 |
| chr1 | 3032095 | 1.22% | 9866 |
| chr2 | 2004708 | 0.83% | 6920 |
| chr3 | 1775048 | 0.90% | 5832 |
| chr4 | 929757 | 0.49% | 3113 |
| chr5 | 1428878 | 0.79% | 4746 |
| chr6 | 1284620 | 0.75% | 4250 |
| chr7 | 1553636 | 0.98% | 5020 |
| chr8 | 977624 | 0.67% | 3296 |
| chr9 | 1658118 | 1.20% | 5031 |
| chr10 | 1285680 | 0.96% | 4331 |
| chr11 | 1774330 | 1.31% | 5444 |
| chr12 | 1804837 | 1.35% | 5713 |
| chr13 | 482161 | 0.42% | 1738 |
| chr14 | 1007010 | 0.94% | 3348 |
| chr15 | 1174721 | 1.15% | 3780 |
| chr16 | 2119248 | 2.35% | 6334 |
| chr17 | 2331554 | 2.80% | 6984 |
| chr18 | 371183 | 0.46% | 1390 |
| chr19 | 2717985 | 4.64% | 7473 |
| chr20 | 1270115 | 1.97% | 3894 |
| chr21 | 428830 | 0.92% | 1294 |
| chr22 | 1331902 | 2.62% | 3755 |
| chrX | 296606 | 0.19% | 1054 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104606 | 115 | 4392 | 315.86 | 246 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF884ZOW.bed.gz | 1.78 MB | b730f9e5d29094ccf305d8988ba6996d |
| ENCFF884ZOW.tabix.bed.gz | 972.82 KB | 62ce617add66c185f646af1e53a42446 |
| ENCFF884ZOW.tabix.bed.gz.tbi | 160.57 KB | 5de6abd6f3a01f9f39c1cedc86e09538 |
| genomic_resource.yaml | 2.92 KB | 64e9093ae1f7dee1e1fc3731316fa5cd |
| statistics/ |
