Histone_ChIP-seq_ENCSR000DQR
Histone_ChIP-seq ENCSR000DQR [biosample_summary="Homo sapiens B cell female adult (27 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DQR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DQR [biosamplesummary="Homo sapiens B cell female adult (27 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 3 summary: female adult (27 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN065YTV|/analyses/ENCAN065YTV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF699RDR|/files/ENCFF699RDR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17181470 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF699RDR|/files/ENCFF699RDR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF699RDR|/files/ENCFF699RDR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQR | float |
Histone_ChIP-seq_ENCSR000DQR |
Histone_ChIP-seq ENCSR000DQR [biosample_summary="Homo sapiens B cell female adult (27 years)" and target="H3K4me3"]
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[1.97, 141] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF297YIN.bed.gz | 724.83 KB | 3fc2f6d406a5278f1682d6270a6dbcaf |
| ENCFF297YIN.bed.gz.dvc | 100.0 B | d3bb905f24ebcb12374196d8c1cf29ea |
| ENCFF297YIN.tabix.bed.gz | 316.24 KB | 78fd8b7612cff5b50c94e3e821a52583 |
| ENCFF297YIN.tabix.bed.gz.dvc | 106.0 B | 03799db49c1b6ea6281f41bd7e717c20 |
| ENCFF297YIN.tabix.bed.gz.tbi | 159.13 KB | 5c8cd04a9e4a5718a6be32214fa4ce84 |
| ENCFF297YIN.tabix.bed.gz.tbi.dvc | 110.0 B | 15543e850c0223e4e857453d31eba124 |
| genomic_resource.yaml | 3.21 KB | 929011c086ac29f39c0e585d613436a7 |
| genomic_resource_original.yaml | 3.08 KB | ec481580475d58bc8f312de25541e6ab |
| statistics/ |