Resource

Id Histone_ChIP-seq/ENCSR000DQLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000DQL [biosample_summary="Homo sapiens Caco-2" and target="H3K27me3"]
Description
Labels
  • accession: ENCSR000DQL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001099/
  • biosample_summary: Homo sapiens Caco-2
  • date_created: 2014-02-12T23:07:10.092334+00:00
  • date_released: 2011-02-11
  • doi: 10.17989/ENCSR000DQL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Replicate 2,1 of this experiment was previously attributed to biosample ENCBS391ENC and replicate 1,1 of this experiment was previously attributed to biosample ENCBS391ENC but they have since been corrected to the current biosamples. Please note that the biosample term has remain unchanged.
  • target: H3K27me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000DQL float

Histone_ChIP-seq_ENCSR000DQL

Histone_ChIP-seq ENCSR000DQL [biosample_summary="Homo sapiens Caco-2" and target="H3K27me3"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000DQL [2.05, 8.01]
n
1,173,352
mean
3.93
sd
0.785

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 11733520.04% 6366
chr1 48666 0.02% 279
chr2 106007 0.04% 578
chr3 31861 0.02% 192
chr4 9884 0.01% 61
chr5 59699 0.03% 350
chr6 39890 0.02% 223
chr7 53071 0.03% 311
chr8 17458 0.01% 100
chr9 19437 0.01% 109
chr10 131917 0.10% 710
chr11 184794 0.14% 982
chr12 71371 0.05% 361
chr13 42959 0.04% 239
chr14 22225 0.02% 129
chr15 17924 0.02% 103
chr16 38468 0.04% 222
chr17 75980 0.09% 376
chr18 6230 0.01% 35
chr19 24960 0.04% 130
chr20 153608 0.24% 774
chr21 3202 0.01% 19
chr22 12646 0.02% 75
chrX 1095 <0.01% 8
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 6366 115 1359 184.32 158
global segment-length histogram

Files

Filename Size md5
ENCFF649WIT.bed.gz 115.67 KB 510b9f844b0e7c9afb813c57a866d125
ENCFF649WIT.tabix.bed.gz 63.49 KB f595d1507abbf1c1b7cb566c78f3e77e
ENCFF649WIT.tabix.bed.gz.tbi 45.8 KB 6234b97a25152580ef1bdebc1d7e17e6
genomic_resource.yaml 2.91 KB b3d2d397c65513c189335381f3a1e681
statistics/