Resource
| Id | Histone_ChIP-seq/ENCSR000DQL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQL [biosample_summary="Homo sapiens Caco-2" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Released analysis {ENCAN923SXV|/analyses/ENCAN923SXV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN923SXV|/analyses/ENCAN923SXV/} has in progress subobject document {06b95de9-03af-4bf2-9f73-c7b914c479a7|/documents/06b95de9-03af-4bf2-9f73-c7b914c479a7/} audit_not_compliant: Processed alignments file {ENCFF064IQV|/files/ENCFF064IQV/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 14606302 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF957OES|/files/ENCFF957OES/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 12760707 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQL | float |
Histone_ChIP-seq_ENCSR000DQL |
Histone_ChIP-seq ENCSR000DQL [biosample_summary="Homo sapiens Caco-2" and target="H3K27me3"]
|
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[2.05, 8.01] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1173352 | 0.04% | 6366 |
| chr1 | 48666 | 0.02% | 279 |
| chr2 | 106007 | 0.04% | 578 |
| chr3 | 31861 | 0.02% | 192 |
| chr4 | 9884 | 0.01% | 61 |
| chr5 | 59699 | 0.03% | 350 |
| chr6 | 39890 | 0.02% | 223 |
| chr7 | 53071 | 0.03% | 311 |
| chr8 | 17458 | 0.01% | 100 |
| chr9 | 19437 | 0.01% | 109 |
| chr10 | 131917 | 0.10% | 710 |
| chr11 | 184794 | 0.14% | 982 |
| chr12 | 71371 | 0.05% | 361 |
| chr13 | 42959 | 0.04% | 239 |
| chr14 | 22225 | 0.02% | 129 |
| chr15 | 17924 | 0.02% | 103 |
| chr16 | 38468 | 0.04% | 222 |
| chr17 | 75980 | 0.09% | 376 |
| chr18 | 6230 | 0.01% | 35 |
| chr19 | 24960 | 0.04% | 130 |
| chr20 | 153608 | 0.24% | 774 |
| chr21 | 3202 | 0.01% | 19 |
| chr22 | 12646 | 0.02% | 75 |
| chrX | 1095 | <0.01% | 8 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 6366 | 115 | 1359 | 184.32 | 158 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF649WIT.bed.gz | 115.67 KB | 510b9f844b0e7c9afb813c57a866d125 |
| ENCFF649WIT.tabix.bed.gz | 63.49 KB | f595d1507abbf1c1b7cb566c78f3e77e |
| ENCFF649WIT.tabix.bed.gz.tbi | 45.8 KB | 6234b97a25152580ef1bdebc1d7e17e6 |
| genomic_resource.yaml | 2.91 KB | b3d2d397c65513c189335381f3a1e681 |
| statistics/ |
