Resource
| Id | Histone_ChIP-seq/ENCSR000DQG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DQG [biosample_summary="Homo sapiens BJ" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN586KSO|/analyses/ENCAN586KSO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF222EDX|/files/ENCFF222EDX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9554668 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF614THY|/files/ENCFF614THY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12566886 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DQG | float |
Histone_ChIP-seq_ENCSR000DQG |
Histone_ChIP-seq ENCSR000DQG [biosample_summary="Homo sapiens BJ" and target="H3K27me3"]
|
 |
[1.92, 16.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25652021 | 0.80% | 96314 |
| chr1 | 2573435 | 1.03% | 9413 |
| chr2 | 2110705 | 0.87% | 8058 |
| chr3 | 1416063 | 0.71% | 5556 |
| chr4 | 1010834 | 0.53% | 3891 |
| chr5 | 1286892 | 0.71% | 4937 |
| chr6 | 1262764 | 0.74% | 4851 |
| chr7 | 1091835 | 0.69% | 4084 |
| chr8 | 1079219 | 0.74% | 4217 |
| chr9 | 1217518 | 0.88% | 4447 |
| chr10 | 1516536 | 1.13% | 5611 |
| chr11 | 1741510 | 1.29% | 6653 |
| chr12 | 1072417 | 0.80% | 3981 |
| chr13 | 669909 | 0.59% | 2572 |
| chr14 | 768134 | 0.72% | 2882 |
| chr15 | 1026302 | 1.01% | 3791 |
| chr16 | 791770 | 0.88% | 2993 |
| chr17 | 1623355 | 1.95% | 5535 |
| chr18 | 515968 | 0.64% | 2153 |
| chr19 | 697371 | 1.19% | 2411 |
| chr20 | 1044728 | 1.62% | 3923 |
| chr21 | 367123 | 0.79% | 1333 |
| chr22 | 620422 | 1.22% | 2403 |
| chrX | 146479 | 0.09% | 615 |
| chrY | 732 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96314 | 125 | 4516 | 266.34 | 204 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF586IIZ.bed.gz | 1.61 MB | b3b48b3c84f626750c3473ddb0226a25 |
| ENCFF586IIZ.tabix.bed.gz | 875.33 KB | 18345b00413128c004de78eb55796a48 |
| ENCFF586IIZ.tabix.bed.gz.tbi | 213.91 KB | c509d50cb81acc3abbd921a45fb86107 |
| genomic_resource.yaml | 2.36 KB | f78fea0cf7d7b9ef6deb5d2d7da0e875 |
| statistics/ |