type: position_score
table:
  filename: ENCFF089ITH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000DQB
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR000DQB [biosample_summary="Homo sapiens BE2C" and target="H3K4me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR000DQB [biosample_summary="Homo sapiens BE2C" and target="H3K4me3"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: replicated peaks\n\n**audit\\_internal\\\
    _action**: Archived analysis {ENCAN944HIR|/analyses/ENCAN944HIR/} has in progress\
    \ subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF944HIX|/files/ENCFF944HIX/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18522304 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me3-human and investigated as a narrow histone mark is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF257FKY|/files/ENCFF257FKY/} processed\
    \ by ChIP-seq ENCODE3 GRCh38 pipeline has 18102397 usable fragments. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human\
    \ and investigated as a narrow histone mark is 10 million usable fragments. The\
    \ recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE\
    \ ChIP-seq data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DQB
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens BE2C
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0005725/
    perturbed: false
    doi: 10.17989/ENCSR000DQB
    date_created: '2013-12-12T06:56:20.188711+00:00'
    date_released: '2011-11-17'
    submitter_comment: Replicate 1,1 of this experiment was previously attributed
      to biosample ENCBS403ENC but it has since been corrected to the current biosample.
      Please note that the biosample term has remain unchanged.
    target: H3K4me3
