Histone_ChIP-seq_ENCSR000DPX
Histone_ChIP-seq ENCSR000DPX [biosample_summary="Homo sapiens AG10803" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DPX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DPX [biosamplesummary="Homo sapiens AG10803" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN316SIT|/analyses/ENCAN316SIT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF270HAZ|/files/ENCFF270HAZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF270HAZ|/files/ENCFF270HAZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF044VLF|/files/ENCFF044VLF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF044VLF|/files/ENCFF044VLF/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DPX | float |
Histone_ChIP-seq_ENCSR000DPX |
Histone_ChIP-seq ENCSR000DPX [biosample_summary="Homo sapiens AG10803" and target="H3K4me3"]
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[1.91, 108] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF650SIN.bed.gz | 992.29 KB | 0f123d0f8102807a1bcda905f75d38fc |
| ENCFF650SIN.bed.gz.dvc | 101.0 B | e7bef562abf1472757e6ca6e60a4d442 |
| ENCFF650SIN.tabix.bed.gz | 450.49 KB | fd22d8af7761499fcd6a48a9b27b9183 |
| ENCFF650SIN.tabix.bed.gz.dvc | 106.0 B | b4360fcc5aedcff807e93b5d6517bc8b |
| ENCFF650SIN.tabix.bed.gz.tbi | 188.67 KB | 9077855bb8377086961e3a19d94469ea |
| ENCFF650SIN.tabix.bed.gz.tbi.dvc | 110.0 B | 10203633928333817b75ab9563f339ba |
| genomic_resource.yaml | 4.26 KB | 0e5c5208ed900fea627de7c57a25dc4e |
| genomic_resource_original.yaml | 4.15 KB | 9c4ec32f88ff71a0622d9944ac64e879 |
| statistics/ |