Histone_ChIP-seq_ENCSR000DPO
Histone_ChIP-seq ENCSR000DPO [biosample_summary="Homo sapiens AG04450" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DPO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DPO [biosamplesummary="Homo sapiens AG04450" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN124NBL|/analyses/ENCAN124NBL/} has in progress subobject document {d876c034-798b-4449-9c1a-674cef49c8f5|/documents/d876c034-798b-4449-9c1a-674cef49c8f5/} audit_internal_action: Released analysis {ENCAN124NBL|/analyses/ENCAN124NBL/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF860NRT|/files/ENCFF860NRT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19982147 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF578IJM|/files/ENCFF578IJM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 19723704 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF860NRT|/files/ENCFF860NRT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF860NRT|/files/ENCFF860NRT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.46. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF578IJM|/files/ENCFF578IJM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF578IJM|/files/ENCFF578IJM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DPO | float |
Histone_ChIP-seq_ENCSR000DPO |
Histone_ChIP-seq ENCSR000DPO [biosample_summary="Homo sapiens AG04450" and target="H3K4me3"]
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[2.02, 107] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF988TOJ.bed.gz | 855.23 KB | 2b8d4f3f2c7a4ebb377dcec6220ccf26 |
| ENCFF988TOJ.bed.gz.dvc | 100.0 B | de87949dce549156bc96284f3116df6f |
| ENCFF988TOJ.tabix.bed.gz | 400.17 KB | 18dcd2a7e5255894b7565f1c7c89d360 |
| ENCFF988TOJ.tabix.bed.gz.dvc | 106.0 B | e364f7a5f30657a9a3dbf16b87ec1e47 |
| ENCFF988TOJ.tabix.bed.gz.tbi | 175.06 KB | 369532d6cf0c0e824d3d2f111686bf0f |
| ENCFF988TOJ.tabix.bed.gz.tbi.dvc | 110.0 B | c79ca9309155acff0189af9316bb67ca |
| genomic_resource.yaml | 5.23 KB | 8696a1e3f90de80aabfd2445f971933a |
| genomic_resource_original.yaml | 5.12 KB | 74888a674447a4505a43798397f13d71 |
| statistics/ |