Resource
| Id | Histone_ChIP-seq/ENCSR000DPL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DPL [biosample_summary="Homo sapiens AG04450" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN749VJR|/analyses/ENCAN749VJR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF618ZNM|/files/ENCFF618ZNM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12120718 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DPL | float |
Histone_ChIP-seq_ENCSR000DPL |
Histone_ChIP-seq ENCSR000DPL [biosample_summary="Homo sapiens AG04450" and target="H3K27ac"]
|
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[2.14, 123] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42948944 | 1.33% | 73442 |
| chr1 | 4105106 | 1.65% | 6975 |
| chr1_KI270713v1_random | 185 | 0.45% | 1 |
| chr2 | 3464204 | 1.43% | 5943 |
| chr3 | 2566064 | 1.29% | 4469 |
| chr4 | 1527340 | 0.80% | 2833 |
| chr5 | 2305982 | 1.27% | 3874 |
| chr6 | 2291584 | 1.34% | 3999 |
| chr7 | 1964073 | 1.23% | 3296 |
| chr8 | 1760983 | 1.21% | 3126 |
| chr9 | 1933796 | 1.40% | 3358 |
| chr10 | 2072798 | 1.55% | 3573 |
| chr11 | 2455314 | 1.82% | 3990 |
| chr12 | 2187078 | 1.64% | 3666 |
| chr13 | 922138 | 0.81% | 1699 |
| chr14 | 1434146 | 1.34% | 2408 |
| chr14_GL000225v1_random | 329 | 0.16% | 1 |
| chr15 | 1632989 | 1.60% | 2795 |
| chr16 | 1686453 | 1.87% | 2854 |
| chr17 | 2445714 | 2.94% | 3822 |
| chr17_GL000205v2_random | 868 | 0.47% | 2 |
| chr18 | 742677 | 0.92% | 1362 |
| chr19 | 1784065 | 3.04% | 2980 |
| chr20 | 1208870 | 1.88% | 2119 |
| chr21 | 496797 | 1.06% | 860 |
| chr22 | 1069476 | 2.10% | 1783 |
| chrUn_GL000195v1 | 405 | 0.22% | 1 |
| chrUn_GL000219v1 | 208 | 0.12% | 1 |
| chrUn_KI270442v1 | 272 | 0.07% | 1 |
| chrX | 854062 | 0.55% | 1589 |
| chrY | 34968 | 0.06% | 62 |
| 3336 contigs with no values (127885421 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 73442 | 160 | 10711 | 584.8 | 416 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF645LAB.bed.gz | 1.5 MB | 541d768105d3ab04420052f0e3338d9f |
| ENCFF645LAB.tabix.bed.gz | 731.02 KB | aebd6b48569d606170f84532898b18fa |
| ENCFF645LAB.tabix.bed.gz.tbi | 253.45 KB | 244b074b4b2b825a505396a85dabf62f |
| genomic_resource.yaml | 1.87 KB | f20ba3ad38342b804c4a71717be1c4ac |
| statistics/ |
