Resource
| Id | Histone_ChIP-seq/ENCSR000DPK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000DPK [biosample_summary="Homo sapiens AG04450" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN780JIL|/analyses/ENCAN780JIL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF489AAI|/files/ENCFF489AAI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11652753 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DPK | float |
Histone_ChIP-seq_ENCSR000DPK |
Histone_ChIP-seq ENCSR000DPK [biosample_summary="Homo sapiens AG04450" and target="H3K27me3"]
|
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[2.1, 27.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51971438 | 1.62% | 107410 |
| chr1 | 5398264 | 2.17% | 10890 |
| chr2 | 4247602 | 1.75% | 8822 |
| chr3 | 3194650 | 1.61% | 6933 |
| chr4 | 1947971 | 1.02% | 4101 |
| chr5 | 2428886 | 1.34% | 5136 |
| chr6 | 2498148 | 1.46% | 5245 |
| chr7 | 2106716 | 1.32% | 4203 |
| chr8 | 2097807 | 1.45% | 4528 |
| chr9 | 2689973 | 1.94% | 5278 |
| chr10 | 2885783 | 2.16% | 6035 |
| chr11 | 3693505 | 2.73% | 7635 |
| chr12 | 2085827 | 1.57% | 4260 |
| chr13 | 1209841 | 1.06% | 2583 |
| chr14 | 1625333 | 1.52% | 3332 |
| chr15 | 2244321 | 2.20% | 4660 |
| chr16 | 1681092 | 1.86% | 3566 |
| chr17 | 3071480 | 3.69% | 5862 |
| chr18 | 1084167 | 1.35% | 2401 |
| chr19 | 1356444 | 2.31% | 2739 |
| chr20 | 1986955 | 3.08% | 4047 |
| chr21 | 732026 | 1.57% | 1504 |
| chr22 | 1432598 | 2.82% | 2950 |
| chrX | 267089 | 0.17% | 685 |
| chrY | 4960 | 0.01% | 15 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107410 | 160 | 12630 | 483.86 | 357 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF314QBW.bed.gz | 1.71 MB | 5e0afbfb91a7372f2d82430923ebbf17 |
| ENCFF314QBW.tabix.bed.gz | 931.3 KB | b05c2f6675c33b1d3a2a2eaf19e90881 |
| ENCFF314QBW.tabix.bed.gz.tbi | 213.2 KB | f8c7ce67def6dbebd1ec48155baf772a |
| genomic_resource.yaml | 1.88 KB | d07cf79def7caaedf6d1243546f12cf5 |
| statistics/ |
