Histone_ChIP-seq_ENCSR000DPD
Histone_ChIP-seq ENCSR000DPD [biosample_summary="Homo sapiens A549" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000DPD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000DPD [biosamplesummary="Homo sapiens A549" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN362JHZ|/analyses/ENCAN362JHZ/} has in progress subobject document {5ac3c992-1924-4f04-b980-d9e72f083bc0|/documents/5ac3c992-1924-4f04-b980-d9e72f083bc0/} audit_internal_action: Released analysis {ENCAN362JHZ|/analyses/ENCAN362JHZ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF651IDK|/files/ENCFF651IDK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12766478 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF252ASG|/files/ENCFF252ASG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13591011 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF651IDK|/files/ENCFF651IDK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF651IDK|/files/ENCFF651IDK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.55. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF252ASG|/files/ENCFF252ASG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF252ASG|/files/ENCFF252ASG/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.34. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000DPD | float |
Histone_ChIP-seq_ENCSR000DPD |
Histone_ChIP-seq ENCSR000DPD [biosample_summary="Homo sapiens A549" and target="H3K4me3"]
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[1.82, 128] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF361TGO.bed.gz | 840.95 KB | 5aefcf5462cb71779018a01f6f469271 |
| ENCFF361TGO.bed.gz.dvc | 100.0 B | add75817bb1da800c6022b0f6c49f8eb |
| ENCFF361TGO.tabix.bed.gz | 370.33 KB | b8b09baf369f9124164caed29aafe8ee |
| ENCFF361TGO.tabix.bed.gz.dvc | 106.0 B | 61e1acdbbb2dbf126853520eee0e9328 |
| ENCFF361TGO.tabix.bed.gz.tbi | 178.3 KB | 74508423a62b9d7894ddf41f3b7c152b |
| ENCFF361TGO.tabix.bed.gz.tbi.dvc | 110.0 B | 3f6291850cb3f2782a34b25df237aa59 |
| genomic_resource.yaml | 5.22 KB | 837e0d9510c65c020375a2856b46c9de |
| genomic_resource_original.yaml | 5.11 KB | 0b4dcecf84242b88a7c6d24a81eaf452 |
| statistics/ |