Histone_ChIP-seq_ENCSR000ATI
Histone_ChIP-seq ENCSR000ATI [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR000ATI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ATI [biosamplesummary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN986BIX|/analyses/ENCAN986BIX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF188KFL|/files/ENCFF188KFL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14475530 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF188KFL|/files/ENCFF188KFL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF188KFL|/files/ENCFF188KFL/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.86. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF379GQG|/files/ENCFF379GQG/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF379GQG|/files/ENCFF379GQG/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.27. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ATI | float |
Histone_ChIP-seq_ENCSR000ATI |
Histone_ChIP-seq ENCSR000ATI [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K27me3"]
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[1.65, 10.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF585KRM.bed.gz | 4.22 MB | 06d8c64605bc33c02839814c84d77035 |
| ENCFF585KRM.bed.gz.dvc | 101.0 B | e12ef710b940288534e1e5477936497c |
| ENCFF585KRM.tabix.bed.gz | 2.06 MB | 3383a785dfae9c8966dcf567a128e1af |
| ENCFF585KRM.tabix.bed.gz.dvc | 107.0 B | 385e59b305b4aacece4025378e3620e1 |
| ENCFF585KRM.tabix.bed.gz.tbi | 288.54 KB | 4c2a1322aaa374c3257b64a23570790d |
| ENCFF585KRM.tabix.bed.gz.tbi.dvc | 110.0 B | aa2a9384a3d4af80d41cc3568b14c5be |
| genomic_resource.yaml | 4.52 KB | 41cd1351adccf0106b74a54c4c09fb2b |
| genomic_resource_original.yaml | 4.38 KB | 6e3d98610a96646f74147a1af321b7db |
| statistics/ |