Histone_ChIP-seq_ENCSR000ATD
Histone_ChIP-seq ENCSR000ATD [biosample_summary="Homo sapiens HepG2" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR000ATD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ATD [biosamplesummary="Homo sapiens HepG2" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN305JUK|/analyses/ENCAN305JUK/} has in progress subobject document {54025e8b-5cdc-47da-8a41-fc167caac0d3|/documents/54025e8b-5cdc-47da-8a41-fc167caac0d3/} audit_internal_action: Released analysis {ENCAN305JUK|/analyses/ENCAN305JUK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF828OFD|/files/ENCFF828OFD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF828OFD|/files/ENCFF828OFD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.20. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ATD | float |
Histone_ChIP-seq_ENCSR000ATD |
Histone_ChIP-seq ENCSR000ATD [biosample_summary="Homo sapiens HepG2" and target="H3K9me3"]
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[1.59, 18.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF372HCL.bed.gz | 3.04 MB | bc575658af0c6308417d183159c76128 |
| ENCFF372HCL.bed.gz.dvc | 101.0 B | 9d2b27dbee714248324403ef658552f8 |
| ENCFF372HCL.tabix.bed.gz | 1.43 MB | cf34b2fa2c57ae559fb46c751d827407 |
| ENCFF372HCL.tabix.bed.gz.dvc | 107.0 B | 4306f3836f88d7d365022a25c25962ca |
| ENCFF372HCL.tabix.bed.gz.tbi | 225.77 KB | 433e6b51e7e2031640dd1229e25dd84d |
| ENCFF372HCL.tabix.bed.gz.tbi.dvc | 110.0 B | eaa6d797cf15a9162a4bab72e4c8713d |
| genomic_resource.yaml | 3.01 KB | e26f5ab4521d2127dec41872a7c0942b |
| genomic_resource_original.yaml | 2.91 KB | 54037a50e298d6ecbac7bd19a49c572e |
| statistics/ |