Resource

Id Histone_ChIP-seq/ENCSR000ATBcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000ATB [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR000ATB
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0002618/
  • biosample_summary: Homo sapiens endothelial cell of umbilical vein newborn
  • date_created: 2013-11-07T22:16:18.368886+00:00
  • date_released: 2012-08-06
  • doi: 10.17989/ENCSR000ATB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: anisogenic
  • simple_biosample_summary: newborn
  • status: released
  • submitter_comment: As of August 2022, the donors associated with the biosamples in this dataset were changed from ENCDO551FXN to ENCDO466MPW and ENCDO560UMK. See PMID:32728101.
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000ATB float

Histone_ChIP-seq_ENCSR000ATB
Histone_ChIP-seq ENCSR000ATB [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000ATB [1.91, 12.5]
n
11,085,438
mean
3.9
sd
0.781

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 110854380.34% 44475
chr1 482833 0.19% 1979
chr2 1016099 0.42% 4232
chr3 583807 0.29% 2540
chr4 679726 0.36% 2893
chr5 765098 0.42% 3212
chr6 381996 0.22% 1644
chr7 609577 0.38% 2458
chr8 718875 0.50% 2913
chr9 274957 0.20% 1148
chr10 553987 0.41% 2232
chr11 393924 0.29% 1698
chr12 518195 0.39% 2079
chr13 479966 0.42% 1986
chr14 336326 0.31% 1422
chr15 395131 0.39% 1460
chr16 536228 0.59% 2132
chr17 276549 0.33% 1119
chr18 357917 0.45% 1485
chr19 653210 1.11% 1864
chr20 345078 0.54% 1371
chr21 304274 0.65% 1053
chr22 357918 0.70% 1303
chrX 33685 0.02% 143
chrY 30082 0.05% 109
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44475 148 4507 249.25 214
global segment-length histogram

Files

Filename Size md5
ENCFF698YEG.bed.gz 706.33 KB 4389bdb69b02e33e670a878862c96ab9
ENCFF698YEG.tabix.bed.gz 399.71 KB dc58e1188c2eb9c0711ca0e2c14017e4
ENCFF698YEG.tabix.bed.gz.tbi 165.31 KB 747faa34dfd99ad09e6d9c3921e76d6b
genomic_resource.yaml 2.35 KB e0351cbf457fb2c108337da909cd0a48
statistics/