Resource
| Id | Histone_ChIP-seq/ENCSR000ASP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ASP [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN586YKP|/analyses/ENCAN586YKP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF667WFN|/files/ENCFF667WFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21602526 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF164VYS|/files/ENCFF164VYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 21714365 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASP | float |
Histone_ChIP-seq_ENCSR000ASP |
Histone_ChIP-seq ENCSR000ASP [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K9me3"]
|
 |
[1.97, 38.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 71538060 | 2.22% | 81534 |
| chr1 | 3851095 | 1.55% | 4638 |
| chr1_KI270708v1_random | 731 | 0.57% | 1 |
| chr1_KI270709v1_random | 5477 | 8.19% | 4 |
| chr1_KI270712v1_random | 723 | 0.41% | 1 |
| chr1_KI270713v1_random | 461 | 1.13% | 1 |
| chr2 | 4710288 | 1.94% | 5950 |
| chr2_KI270716v1_random | 6833 | 4.44% | 3 |
| chr3 | 3733499 | 1.88% | 4917 |
| chr4 | 3538434 | 1.86% | 4455 |
| chr4_GL000008v2_random | 4451 | 2.12% | 1 |
| chr5 | 4983553 | 2.75% | 6122 |
| chr5_GL000208v1_random | 8299 | 8.95% | 10 |
| chr6 | 3626160 | 2.12% | 4610 |
| chr7 | 5888246 | 3.70% | 6729 |
| chr8 | 3322960 | 2.29% | 3873 |
| chr9 | 2133606 | 1.54% | 2528 |
| chr9_KI270719v1_random | 732 | 0.41% | 2 |
| chr9_KI270720v1_random | 1358 | 3.48% | 2 |
| chr10 | 3060352 | 2.29% | 3414 |
| chr11 | 2792919 | 2.07% | 3481 |
| chr12 | 3377685 | 2.53% | 3661 |
| chr13 | 2642688 | 2.31% | 3615 |
| chr14 | 1642514 | 1.53% | 2061 |
| chr14_GL000194v1_random | 1327 | 0.69% | 2 |
| chr14_GL000225v1_random | 38496 | 18.23% | 44 |
| chr14_KI270722v1_random | 17241 | 8.88% | 16 |
| chr14_KI270723v1_random | 771 | 2.02% | 1 |
| chr14_KI270724v1_random | 1952 | 4.93% | 3 |
| chr15 | 2325629 | 2.28% | 2670 |
| chr16 | 1993462 | 2.21% | 2029 |
| chr17 | 1695111 | 2.04% | 1831 |
| chr17_GL000205v2_random | 51861 | 27.94% | 16 |
| chr17_KI270729v1_random | 90449 | 32.21% | 51 |
| chr17_KI270730v1_random | 24488 | 21.76% | 12 |
| chr18 | 1458967 | 1.82% | 1797 |
| chr19 | 8386069 | 14.31% | 5842 |
| chr20 | 1364076 | 2.12% | 1665 |
| chr21 | 1363021 | 2.92% | 1664 |
| chr22 | 731498 | 1.44% | 858 |
| chr22_KI270732v1_random | 3196 | 7.69% | 5 |
| chr22_KI270733v1_random | 5261 | 2.93% | 12 |
| chr22_KI270735v1_random | 5561 | 12.99% | 6 |
| chr22_KI270736v1_random | 136906 | 75.26% | 29 |
| chr22_KI270738v1_random | 33108 | 33.32% | 22 |
| chrUn_GL000214v1 | 1750 | 1.27% | 4 |
| chrUn_GL000216v2 | 69010 | 39.08% | 13 |
| chrUn_GL000219v1 | 9424 | 5.26% | 8 |
| chrUn_GL000224v1 | 15063 | 8.38% | 15 |
| chrUn_KI270302v1 | 525 | 23.09% | 1 |
| chrUn_KI270429v1 | 685 | 50.33% | 1 |
| chrUn_KI270435v1 | 3736 | 4.02% | 5 |
| chrUn_KI270438v1 | 40537 | 36.03% | 30 |
| chrUn_KI270442v1 | 124421 | 31.74% | 68 |
| chrUn_KI270448v1 | 2440 | 30.53% | 3 |
| chrUn_KI270465v1 | 469 | 26.44% | 1 |
| chrUn_KI270466v1 | 519 | 42.09% | 1 |
| chrUn_KI270467v1 | 1474 | 37.60% | 2 |
| chrUn_KI270468v1 | 1812 | 44.69% | 1 |
| chrUn_KI270507v1 | 1200 | 22.42% | 3 |
| chrUn_KI270508v1 | 399 | 20.45% | 1 |
| chrUn_KI270509v1 | 655 | 28.26% | 1 |
| chrUn_KI270510v1 | 475 | 19.67% | 1 |
| chrUn_KI270511v1 | 2089 | 25.70% | 5 |
| chrUn_KI270512v1 | 1491 | 6.57% | 1 |
| chrUn_KI270515v1 | 1672 | 26.29% | 2 |
| chrUn_KI270517v1 | 1538 | 47.28% | 1 |
| chrUn_KI270519v1 | 8157 | 5.91% | 9 |
| chrUn_KI270521v1 | 448 | 5.86% | 1 |
| chrUn_KI270522v1 | 1763 | 31.07% | 2 |
| chrUn_KI270538v1 | 19719 | 21.60% | 23 |
| chrUn_KI270584v1 | 1227 | 27.19% | 3 |
| chrUn_KI270588v1 | 492 | 7.99% | 1 |
| chrUn_KI270589v1 | 3110 | 6.99% | 1 |
| chrUn_KI270590v1 | 1835 | 39.17% | 1 |
| chrUn_KI270591v1 | 1801 | 31.07% | 2 |
| chrUn_KI270743v1 | 1877 | 0.89% | 3 |
| chrUn_KI270744v1 | 3319 | 1.97% | 4 |
| chrUn_KI270746v1 | 6774 | 10.19% | 11 |
| chrUn_KI270747v1 | 646 | 0.33% | 1 |
| chrUn_KI270749v1 | 1215 | 0.77% | 2 |
| chrUn_KI270750v1 | 6866 | 4.61% | 13 |
| chrUn_KI270751v1 | 2782 | 1.85% | 4 |
| chrUn_KI270753v1 | 440 | 0.70% | 1 |
| chrUn_KI270756v1 | 10193 | 12.81% | 5 |
| chrUn_KI270757v1 | 7846 | 11.01% | 8 |
| chrX | 2081551 | 1.33% | 2596 |
| chrY | 33101 | 0.06% | 21 |
| 3279 contigs with no values (123224193 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 81534 | 235 | 46131 | 877.4 | 654 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF682RJQ.bed.gz | 1.54 MB | 56b9459578dcc2d95c8461ef9c680af4 |
| ENCFF682RJQ.tabix.bed.gz | 802.39 KB | 2dad7d7864b63774650bfa24493073e1 |
| ENCFF682RJQ.tabix.bed.gz.tbi | 289.18 KB | ed056e42c0abc0e5ff5c1afd17865cc0 |
| genomic_resource.yaml | 2.41 KB | c5488393778a482e73c857e6dc1213c1 |
| statistics/ |