Histone_ChIP-seq_ENCSR000ASL
Histone_ChIP-seq ENCSR000ASL [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K36me3"]
×
| Id: | Histone_ChIP-seq/ENCSR000ASL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ASL [biosamplesummary="Homo sapiens CD14-positive monocyte female" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN630KJZ|/analyses/ENCAN630KJZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF466TKD|/files/ENCFF466TKD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14831903 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF704VKY|/files/ENCFF704VKY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17562040 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF466TKD|/files/ENCFF466TKD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF466TKD|/files/ENCFF466TKD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.10. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASL | float |
Histone_ChIP-seq_ENCSR000ASL |
Histone_ChIP-seq ENCSR000ASL [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K36me3"]
|
|
[1.74, 38.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF399HUL.bed.gz | 2.73 MB | 6e602c49421b1f975ff294b0a1dfba72 |
| ENCFF399HUL.bed.gz.dvc | 101.0 B | e0a042d7948bbf27dd15355e9e5bd64f |
| ENCFF399HUL.tabix.bed.gz | 1.25 MB | c7eaf2c5e5898e3b97cf11f7c3674138 |
| ENCFF399HUL.tabix.bed.gz.dvc | 107.0 B | 90ec48ad708d3d89e825d4041b9b0d92 |
| ENCFF399HUL.tabix.bed.gz.tbi | 139.14 KB | 077fa7b5b980b5b7ce83c876101b8b5e |
| ENCFF399HUL.tabix.bed.gz.tbi.dvc | 110.0 B | 4d9188eca53f311a2b85d6286cec1dc6 |
| genomic_resource.yaml | 3.66 KB | 0714b65884c534edf54d277301657357 |
| genomic_resource_original.yaml | 3.53 KB | df3a99c67e512bb4c489eba8915468b2 |
| statistics/ |