Resource
| Id | Histone_ChIP-seq/ENCSR000ASJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ASJ [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN990KWJ|/analyses/ENCAN990KWJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF615XCI|/files/ENCFF615XCI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15904718 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF643HON|/files/ENCFF643HON/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17496557 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASJ | float |
Histone_ChIP-seq_ENCSR000ASJ |
Histone_ChIP-seq ENCSR000ASJ [biosample_summary="Homo sapiens CD14-positive monocyte female" and target="H3K27ac"]
|
 |
[1.81, 108] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 114730611 | 3.57% | 88575 |
| chr1 | 11103938 | 4.46% | 8539 |
| chr2 | 9200637 | 3.80% | 6928 |
| chr3 | 7774168 | 3.92% | 6153 |
| chr4 | 4662200 | 2.45% | 3795 |
| chr5 | 5997570 | 3.30% | 4564 |
| chr6 | 6746295 | 3.95% | 5216 |
| chr7 | 5138733 | 3.22% | 4117 |
| chr8 | 4554397 | 3.14% | 3566 |
| chr9 | 4983892 | 3.60% | 3807 |
| chr10 | 5428393 | 4.06% | 4187 |
| chr11 | 5995655 | 4.44% | 4389 |
| chr12 | 6305554 | 4.73% | 4899 |
| chr13 | 2456810 | 2.15% | 1994 |
| chr14 | 3811846 | 3.56% | 2921 |
| chr15 | 4228189 | 4.15% | 3244 |
| chr16 | 4019556 | 4.45% | 3204 |
| chr17 | 5587148 | 6.71% | 4289 |
| chr18 | 2058072 | 2.56% | 1625 |
| chr19 | 4535577 | 7.74% | 3484 |
| chr20 | 3498590 | 5.43% | 2563 |
| chr21 | 1544578 | 3.31% | 1120 |
| chr22 | 2624221 | 5.16% | 2033 |
| chrX | 2474592 | 1.59% | 1938 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 88575 | 250 | 38156 | 1295.29 | 860 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF221DZR.bed.gz | 2.14 MB | 840bad9b1e54b87e838b49cd57f6b492 |
| ENCFF221DZR.tabix.bed.gz | 965.18 KB | b909abf6d4c71078ab1a0fa0ac91b6a5 |
| ENCFF221DZR.tabix.bed.gz.tbi | 221.14 KB | b4c5a99a71fc1c9f1fa13bc8329e1abd |
| genomic_resource.yaml | 2.39 KB | 51321c54ca16af400f8d6a0657bb7410 |
| statistics/ |