Resource
| Id | Histone_ChIP-seq/ENCSR000ASG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ASG [biosample_summary="Homo sapiens osteoblast" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN492JCW|/analyses/ENCAN492JCW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF157NXN|/files/ENCFF157NXN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23388874 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASG | float |
Histone_ChIP-seq_ENCSR000ASG |
Histone_ChIP-seq ENCSR000ASG [biosample_summary="Homo sapiens osteoblast" and target="H3K79me2"]
|
 |
[1.67, 32.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 144771934 | 4.50% | 180360 |
| chr1 | 13416004 | 5.39% | 16774 |
| chr2 | 11270818 | 4.65% | 13322 |
| chr3 | 10171881 | 5.13% | 12605 |
| chr4 | 6776483 | 3.56% | 8494 |
| chr5 | 8161418 | 4.50% | 9855 |
| chr6 | 7279370 | 4.26% | 9320 |
| chr7 | 7755976 | 4.87% | 9958 |
| chr8 | 6298396 | 4.34% | 7652 |
| chr9 | 6265894 | 4.53% | 7702 |
| chr10 | 7518466 | 5.62% | 9402 |
| chr11 | 7155207 | 5.30% | 8605 |
| chr12 | 7726261 | 5.80% | 9837 |
| chr13 | 4198232 | 3.67% | 5157 |
| chr14 | 4819882 | 4.50% | 6134 |
| chr15 | 5584015 | 5.47% | 6948 |
| chr16 | 5120595 | 5.67% | 6521 |
| chr17 | 6583461 | 7.91% | 8530 |
| chr18 | 2897810 | 3.61% | 3751 |
| chr19 | 5290695 | 9.03% | 6496 |
| chr20 | 3631450 | 5.64% | 4300 |
| chr21 | 1448572 | 3.10% | 1723 |
| chr22 | 3148462 | 6.20% | 3840 |
| chrUn_GL000195v1 | 1585 | 0.87% | 4 |
| chrX | 2251001 | 1.44% | 3430 |
| 3342 contigs with no values (186121604 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 180360 | 140 | 39390 | 802.68 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF118PWC.bed.gz | 4.02 MB | 5da607b2d03a93c743dc0cb8dfaec3af |
| ENCFF118PWC.tabix.bed.gz | 1.82 MB | d18f4a5b076a355add41912c6dc45b31 |
| ENCFF118PWC.tabix.bed.gz.tbi | 152.28 KB | 32da57af71bc29e8d5ecd2dfb86356f4 |
| genomic_resource.yaml | 1.88 KB | fac660985c0b1a5e808b7644568c3268 |
| statistics/ |