| Id: | Histone_ChIP-seq/ENCSR000ASF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ASF [biosamplesummary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN176WBT|/analyses/ENCAN176WBT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF649JWQ|/files/ENCFF649JWQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 26488130 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF882JAM|/files/ENCFF882JAM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 24344287 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF882JAM|/files/ENCFF882JAM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF882JAM|/files/ENCFF882JAM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.17. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASF | float |
Histone_ChIP-seq_ENCSR000ASF |
Histone_ChIP-seq ENCSR000ASF [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K79me2"]
|
 |
[2.01, 32.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF958IYH.bed.gz | 2.33 MB | 58df968429bd1d4d99fa4264fe04b917 |
| ENCFF958IYH.bed.gz.dvc | 101.0 B | 8cb55d4095a0695365ac03e15a0fa37c |
| ENCFF958IYH.tabix.bed.gz | 1.16 MB | a8cf2255398d896fdf99a8e959ddddb4 |
| ENCFF958IYH.tabix.bed.gz.dvc | 107.0 B | 38fbc028d1b0bebddcb6c584b2b4adb6 |
| ENCFF958IYH.tabix.bed.gz.tbi | 125.74 KB | 8cc16e8856d208c45dfbaa3d796dc751 |
| ENCFF958IYH.tabix.bed.gz.tbi.dvc | 110.0 B | 5b35bcc0fd4d3b5209b35acc6db01986 |
| genomic_resource.yaml | 3.86 KB | 0e5e49610051d2b1fe90c66e409e488b |
| genomic_resource_original.yaml | 3.69 KB | 32af30acdf05c3be310b53ce1e59034c |
| statistics/ |