Resource
| Id | Histone_ChIP-seq/ENCSR000ASD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ASD [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN973APA|/analyses/ENCAN973APA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF251MRD|/files/ENCFF251MRD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15488849 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF561ROR|/files/ENCFF561ROR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 28803309 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ASD | float |
Histone_ChIP-seq_ENCSR000ASD |
Histone_ChIP-seq ENCSR000ASD [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K79me2"]
|
 |
[1.79, 34] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 83699212 | 2.60% | 138638 |
| chr1 | 8099922 | 3.25% | 13312 |
| chr2 | 6493559 | 2.68% | 10466 |
| chr3 | 6020744 | 3.04% | 9554 |
| chr4 | 4002726 | 2.10% | 6750 |
| chr5 | 4656250 | 2.56% | 7653 |
| chr6 | 4360510 | 2.55% | 7600 |
| chr7 | 4475357 | 2.81% | 7315 |
| chr8 | 3719190 | 2.56% | 5890 |
| chr9 | 3414862 | 2.47% | 5741 |
| chr10 | 4148301 | 3.10% | 6932 |
| chr11 | 3956585 | 2.93% | 6654 |
| chr12 | 4672329 | 3.51% | 7764 |
| chr13 | 2222303 | 1.94% | 3692 |
| chr14 | 2683627 | 2.51% | 4594 |
| chr15 | 3125277 | 3.06% | 5462 |
| chr16 | 2891288 | 3.20% | 4719 |
| chr17 | 3481806 | 4.18% | 5997 |
| chr18 | 1649999 | 2.05% | 2953 |
| chr19 | 2717233 | 4.64% | 4350 |
| chr20 | 2252641 | 3.50% | 3387 |
| chr21 | 1173896 | 2.51% | 1764 |
| chr22 | 1863102 | 3.67% | 3086 |
| chrX | 1502679 | 0.96% | 2791 |
| chrY | 115026 | 0.20% | 212 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 138638 | 120 | 25719 | 603.72 | 328 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF229RMW.bed.gz | 2.85 MB | c8ae6ddc028fd4f1bed7f7b08aef3f8e |
| ENCFF229RMW.tabix.bed.gz | 1.36 MB | 1a645d3756aa287dbd4a46e54f4f2850 |
| ENCFF229RMW.tabix.bed.gz.tbi | 132.0 KB | 9a9ec504b718dc0bd64af7c43d220d62 |
| genomic_resource.yaml | 2.61 KB | d7d595ef0e5e722e032746e8bcbbd324 |
| statistics/ |