Histone_ChIP-seq_ENCSR000ARX
Histone_ChIP-seq ENCSR000ARX [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K9me3"]
×
| Id: | Histone_ChIP-seq/ENCSR000ARX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ARX [biosamplesummary="Homo sapiens fibroblast of dermis" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN389UPU|/analyses/ENCAN389UPU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF584VOZ|/files/ENCFF584VOZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 5624559 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF766WYG|/files/ENCFF766WYG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 42964639 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF506WJB|/files/ENCFF506WJB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF506WJB|/files/ENCFF506WJB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.98. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARX | float |
Histone_ChIP-seq_ENCSR000ARX |
Histone_ChIP-seq ENCSR000ARX [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K9me3"]
|
|
[1.66, 8.84] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF257VHT.bed.gz | 92.5 KB | 05a41f0748065d9d134bb8a3ceecb823 |
| ENCFF257VHT.bed.gz.dvc | 99.0 B | 5ed29697cc02860e5c951dc0684a91bd |
| ENCFF257VHT.tabix.bed.gz | 51.91 KB | 7fa68b9edfedd73002fb415075f46338 |
| ENCFF257VHT.tabix.bed.gz.dvc | 105.0 B | 3a97a6f280b84aa7860e832b2f6371c8 |
| ENCFF257VHT.tabix.bed.gz.tbi | 45.29 KB | 00ec2201d7d540536cd3bd648d982359 |
| ENCFF257VHT.tabix.bed.gz.tbi.dvc | 109.0 B | 47b668174cc6d2b5e36e7aa837b1f4b7 |
| genomic_resource.yaml | 3.8 KB | 86f0c4a2b51f06d6f5039162b498ef32 |
| genomic_resource_original.yaml | 3.68 KB | da32e84e4e4cb27a0a7f0e0cf0fb64b8 |
| statistics/ |