Histone_ChIP-seq_ENCSR000ARW
Histone_ChIP-seq ENCSR000ARW [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR000ARW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ARW [biosamplesummary="Homo sapiens fibroblast of dermis" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_error: Processed alignments file {ENCFF581THL|/files/ENCFF581THL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 4392949 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN894ZIT|/analyses/ENCAN894ZIT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN894ZIT|/analyses/ENCAN894ZIT/} has in progress subobject document {ab096a01-8946-4992-8493-f574968155df|/documents/ab096a01-8946-4992-8493-f574968155df/} audit_not_compliant: Processed alignments file {ENCFF129EQX|/files/ENCFF129EQX/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 30349106 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF129EQX|/files/ENCFF129EQX/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF129EQX|/files/ENCFF129EQX/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.22. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARW | float |
Histone_ChIP-seq_ENCSR000ARW |
Histone_ChIP-seq ENCSR000ARW [biosample_summary="Homo sapiens fibroblast of dermis" and target="H3K79me2"]
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[1.66, 31.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF624VMS.bed.gz | 1.45 MB | a75253aa5915fee43e1419aa3855aaf1 |
| ENCFF624VMS.bed.gz.dvc | 101.0 B | 0f35ab6e1d018f3004dc4e32d4ef08cd |
| ENCFF624VMS.tabix.bed.gz | 655.17 KB | 335515fcb6e2b47cb162d54f727599d0 |
| ENCFF624VMS.tabix.bed.gz.dvc | 106.0 B | 0c4fb04f6f4721f6a7ee09564f5298e9 |
| ENCFF624VMS.tabix.bed.gz.tbi | 112.55 KB | a8fa92dbb590e3347f324105c5dd5492 |
| ENCFF624VMS.tabix.bed.gz.tbi.dvc | 110.0 B | b093fa304982ebc40da25768edd42e45 |
| genomic_resource.yaml | 4.05 KB | 3e4989353cb62f35fa5ae0b5a7a34700 |
| genomic_resource_original.yaml | 3.94 KB | 42c992eb6b4a3e2147135ea8259788fb |
| statistics/ |