Resource

Id Histone_ChIP-seq/ENCSR000ARUcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000ARU [biosample_summary="Homo sapiens astrocyte" and target="H4K20me1"]
Description
Labels
  • accession: ENCSR000ARU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000127/
  • biosample_summary: Homo sapiens astrocyte
  • date_created: 2013-11-07T22:16:06.585673+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000ARU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Fastq file ENCFF000CIZ contains reads of mixed lengths. Read lengths followed by respective number of reads: (36, 55882599), (51, 21163607). As of October 5th, 2017, the experiment has released new processed files due to new control bams.
  • target: H4K20me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000ARU float

Histone_ChIP-seq_ENCSR000ARU

Histone_ChIP-seq ENCSR000ARU [biosample_summary="Homo sapiens astrocyte" and target="H4K20me1"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000ARU [1.61, 23.7]
n
121,503,819
mean
4.94
sd
1.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1215038193.78% 115376
chr1 11602103 4.66% 10856
chr2 8818078 3.64% 8582
chr3 7792112 3.93% 7670
chr4 4284862 2.25% 4652
chr5 6287643 3.46% 5943
chr6 5168832 3.03% 5137
chr7 6824260 4.28% 6456
chr8 4512578 3.11% 4393
chr9 5542970 4.01% 5008
chr10 6743899 5.04% 6499
chr11 6187941 4.58% 5817
chr12 6001549 4.50% 5839
chr13 2662518 2.33% 2805
chr14 4364059 4.08% 4241
chr15 4501663 4.41% 4495
chr16 5917426 6.55% 5106
chr17 6954112 8.35% 6238
chr18 2001470 2.49% 2109
chr19 5175038 8.83% 4308
chr20 3637807 5.64% 3104
chr21 1349768 2.89% 1269
chr22 3765848 7.41% 3267
chrX 1303803 0.84% 1468
chrY 103480 0.18% 114
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 115376 195 25836 1053.11 684
global segment-length histogram

Files

Filename Size md5
ENCFF201FZW.bed.gz 2.68 MB 98113f5ac90b6057f247ae10f65d844b
ENCFF201FZW.tabix.bed.gz 1.18 MB beedf8506bff8ab9882e8a0290efdf78
ENCFF201FZW.tabix.bed.gz.tbi 154.64 KB db4af79a189ccb6f52701135733fe09c
genomic_resource.yaml 2.36 KB 7f9780c606a9babf3f3351a6a42bbf63
statistics/