type: position_score
table:
  filename: ENCFF649IVK.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000ART
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR000ART [biosample_summary="Homo sapiens astrocyte" and target="H3K9ac"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR000ART [biosample_summary="Homo sapiens astrocyte" and target="H3K9ac"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN294BMJ|/analyses/ENCAN294BMJ/} has in progress\
    \ subobject document {f8cfe1a1-e86b-43ed-93af-489e0beaab00|/documents/f8cfe1a1-e86b-43ed-93af-489e0beaab00/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN294BMJ|/analyses/ENCAN294BMJ/}\
    \ has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}\n\
    \n**audit\\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\\_distinct)\
    \ is the ratio of the number of genomic locations where exactly one read maps\
    \ uniquely (M1) to the number of genomic locations where some reads map (M\\_distinct).\
    \ A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate\
    \ bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.\
    \ PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments\
    \ file {ENCFF214IIW|/files/ENCFF214IIW/} processed by ChIP-seq ENCODE4 v1.6.0\
    \ GRCh38 pipeline was generated from a library with PBC1 value of 0.89."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000ART
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens astrocyte
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000127/
    perturbed: false
    doi: 10.17989/ENCSR000ART
    date_created: '2013-11-07T22:16:22.459193+00:00'
    date_released: '2012-03-06'
    submitter_comment: ''
    target: H3K9ac
