Resource
| Id | Histone_ChIP-seq/ENCSR000ARQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARQ [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (11 years) male adult (45 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN224QNE|/analyses/ENCAN224QNE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF628ZAE|/files/ENCFF628ZAE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 33370978 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF279JVA|/files/ENCFF279JVA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 43516883 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARQ | float |
Histone_ChIP-seq_ENCSR000ARQ |
Histone_ChIP-seq ENCSR000ARQ [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K9me3"]
|
 |
[2.16, 9.23] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 374187 | 0.01% | 1537 |
| chr1 | 18479 | 0.01% | 73 |
| chr2 | 18806 | 0.01% | 80 |
| chr3 | 4656 | <0.01% | 24 |
| chr4 | 6169 | <0.01% | 31 |
| chr4_GL000008v2_random | 1889 | 0.90% | 7 |
| chr5 | 16253 | 0.01% | 69 |
| chr6 | 9112 | 0.01% | 42 |
| chr7 | 26560 | 0.02% | 88 |
| chr8 | 22238 | 0.02% | 83 |
| chr9 | 9013 | 0.01% | 39 |
| chr9_KI270720v1_random | 205 | 0.52% | 1 |
| chr10 | 14219 | 0.01% | 60 |
| chr11 | 6860 | 0.01% | 33 |
| chr12 | 22341 | 0.02% | 84 |
| chr13 | 5990 | 0.01% | 23 |
| chr14 | 5052 | <0.01% | 25 |
| chr14_GL000225v1_random | 685 | 0.32% | 4 |
| chr14_KI270722v1_random | 157 | 0.08% | 1 |
| chr15 | 19854 | 0.02% | 73 |
| chr16 | 15463 | 0.02% | 67 |
| chr17 | 6279 | 0.01% | 30 |
| chr17_GL000205v2_random | 597 | 0.32% | 3 |
| chr17_KI270729v1_random | 1232 | 0.44% | 3 |
| chr17_KI270730v1_random | 328 | 0.29% | 2 |
| chr18 | 13180 | 0.02% | 51 |
| chr19 | 82419 | 0.14% | 334 |
| chr20 | 5521 | 0.01% | 23 |
| chr21 | 15272 | 0.03% | 74 |
| chr22 | 6474 | 0.01% | 29 |
| chr22_KI270736v1_random | 3347 | 1.84% | 12 |
| chrUn_GL000216v2 | 1015 | 0.57% | 4 |
| chrUn_GL000219v1 | 171 | 0.10% | 1 |
| chrUn_GL000224v1 | 334 | 0.19% | 1 |
| chrUn_KI270435v1 | 136 | 0.15% | 1 |
| chrUn_KI270442v1 | 4465 | 1.14% | 19 |
| chrUn_KI270589v1 | 355 | 0.80% | 2 |
| chrUn_KI270591v1 | 206 | 3.55% | 1 |
| chrUn_KI270744v1 | 1895 | 1.12% | 10 |
| chrUn_KI270751v1 | 182 | 0.12% | 1 |
| chrUn_KI270757v1 | 165 | 0.23% | 1 |
| chrX | 3370 | <0.01% | 14 |
| chrY | 3243 | 0.01% | 14 |
| 3324 contigs with no values (126200924 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 1537 | 120 | 2633 | 243.45 | 194 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF959LWN.bed.gz | 27.74 KB | b85d49ce2b5575e3be65a592bcd82981 |
| ENCFF959LWN.tabix.bed.gz | 15.73 KB | bfc27b0cc138a0be7b56519477bdf882 |
| ENCFF959LWN.tabix.bed.gz.tbi | 15.03 KB | 9f1a0bb4ab953e647a3ce45ed69954b6 |
| genomic_resource.yaml | 2.6 KB | 9a2129be42cf2ac6a1ba81eb7f8a4cce |
| statistics/ |