Resource
| Id | Histone_ChIP-seq/ENCSR000ARN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARN [biosample_summary="Homo sapiens keratinocyte female" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN688YHT|/analyses/ENCAN688YHT/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN688YHT|/analyses/ENCAN688YHT/} has in progress subobject document {264329f7-a171-41d7-9bbb-e9cc74ad83ab|/documents/264329f7-a171-41d7-9bbb-e9cc74ad83ab/} audit_warning: Processed unfiltered alignments file {ENCFF049TZA|/files/ENCFF049TZA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 38545632 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF460ZZP|/files/ENCFF460ZZP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 40473616 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARN | float |
Histone_ChIP-seq_ENCSR000ARN |
Histone_ChIP-seq ENCSR000ARN [biosample_summary="Homo sapiens keratinocyte female" and target="H3K9me3"]
|
![]() |
[2.03, 19.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 9183128 | 0.29% | 30622 |
| chr1 | 496909 | 0.20% | 1667 |
| chr2 | 546335 | 0.23% | 1944 |
| chr3 | 286897 | 0.14% | 988 |
| chr4 | 403206 | 0.21% | 1327 |
| chr5 | 464635 | 0.26% | 1553 |
| chr6 | 283582 | 0.17% | 1003 |
| chr7 | 641409 | 0.40% | 2181 |
| chr8 | 531971 | 0.37% | 1839 |
| chr9 | 231576 | 0.17% | 782 |
| chr10 | 471184 | 0.35% | 1590 |
| chr11 | 275983 | 0.20% | 949 |
| chr12 | 434318 | 0.33% | 1430 |
| chr13 | 290052 | 0.25% | 1060 |
| chr14 | 242777 | 0.23% | 889 |
| chr15 | 384277 | 0.38% | 1165 |
| chr16 | 355864 | 0.39% | 1222 |
| chr17 | 185960 | 0.22% | 618 |
| chr18 | 297050 | 0.37% | 1009 |
| chr19 | 1140129 | 1.95% | 3328 |
| chr20 | 181510 | 0.28% | 611 |
| chr21 | 267451 | 0.57% | 891 |
| chr22 | 375305 | 0.74% | 1151 |
| chrX | 391246 | 0.25% | 1411 |
| chrY | 3502 | 0.01% | 14 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 30622 | 138 | 5250 | 299.89 | 243 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF403AZM.bed.gz | 524.38 KB | 01ecb34899ef175d51bf23830a259999 |
| ENCFF403AZM.tabix.bed.gz | 289.49 KB | 7398e18e6deef0adf8a45ec91d337b07 |
| ENCFF403AZM.tabix.bed.gz.tbi | 140.4 KB | 64446a8d8123f3ed39076cf52e4f6d15 |
| genomic_resource.yaml | 2.6 KB | 1b274ef1af41db67f050ce7e407699d5 |
| statistics/ |
