Resource
| Id | Histone_ChIP-seq/ENCSR000ARM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARM [biosample_summary="Homo sapiens keratinocyte female" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN388JPF|/analyses/ENCAN388JPF/} has in progress subobject document {bac8b139-d05f-4e28-992f-7de7c8133697|/documents/bac8b139-d05f-4e28-992f-7de7c8133697/} audit_internal_action: Released analysis {ENCAN388JPF|/analyses/ENCAN388JPF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF421LAV|/files/ENCFF421LAV/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 32422097 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF042SWH|/files/ENCFF042SWH/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 31875515 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARM | float |
Histone_ChIP-seq_ENCSR000ARM |
Histone_ChIP-seq ENCSR000ARM [biosample_summary="Homo sapiens keratinocyte female" and target="H3K79me2"]
|
 |
[1.87, 36.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 105948241 | 3.29% | 134196 |
| chr1 | 10011895 | 4.02% | 12666 |
| chr2 | 8412289 | 3.47% | 10292 |
| chr3 | 7573260 | 3.82% | 9130 |
| chr4 | 4856474 | 2.55% | 6698 |
| chr5 | 5587701 | 3.08% | 7022 |
| chr6 | 5522392 | 3.23% | 7282 |
| chr7 | 5545666 | 3.48% | 7267 |
| chr8 | 4528158 | 3.12% | 5630 |
| chr9 | 4358715 | 3.15% | 5563 |
| chr10 | 5060704 | 3.78% | 6750 |
| chr11 | 5108141 | 3.78% | 6538 |
| chr12 | 5562666 | 4.17% | 7044 |
| chr13 | 2542312 | 2.22% | 3261 |
| chr14 | 3732644 | 3.49% | 4648 |
| chr15 | 3902557 | 3.83% | 4839 |
| chr16 | 4016655 | 4.45% | 4987 |
| chr17 | 5230381 | 6.28% | 6447 |
| chr18 | 2046455 | 2.55% | 2755 |
| chr19 | 3979427 | 6.79% | 4894 |
| chr20 | 2831318 | 4.39% | 3225 |
| chr21 | 1234691 | 2.64% | 1448 |
| chr22 | 2557524 | 5.03% | 3152 |
| chrX | 1746216 | 1.12% | 2658 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 134196 | 130 | 48574 | 789.5 | 403 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF602AZA.bed.gz | 2.7 MB | 0497250a57ea3c3d7245b1c78c90d346 |
| ENCFF602AZA.tabix.bed.gz | 1.33 MB | c9378a92da2a1f9429d17b17b589b8ff |
| ENCFF602AZA.tabix.bed.gz.tbi | 132.57 KB | a42d8f8ec012a6fdddf27a081e8c4733 |
| genomic_resource.yaml | 2.61 KB | a279300fe50eda072bb471cfaedf1e4f |
| statistics/ |