Histone_ChIP-seq_ENCSR000ARJ
Histone_ChIP-seq ENCSR000ARJ [biosample_summary="Homo sapiens fibroblast of dermis" and target="H4K20me1"]
×
| Id: | Histone_ChIP-seq/ENCSR000ARJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ARJ [biosamplesummary="Homo sapiens fibroblast of dermis" and target="H4K20me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: pseudoreplicated peaks audit_error: Processed alignments file {ENCFF625YGE|/files/ENCFF625YGE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 3651053 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF934EYV|/files/ENCFF934EYV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4999806 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN724MIC|/analyses/ENCAN724MIC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN724MIC|/analyses/ENCAN724MIC/} has in progress subobject document {c00bb442-0d3e-46e8-8956-0bb4a0df8998|/documents/c00bb442-0d3e-46e8-8956-0bb4a0df8998/} audit_not_compliant: Processed alignments file {ENCFF290BBE|/files/ENCFF290BBE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 7667563 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF625YGE|/files/ENCFF625YGE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF625YGE|/files/ENCFF625YGE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.68. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARJ | float |
Histone_ChIP-seq_ENCSR000ARJ |
Histone_ChIP-seq ENCSR000ARJ [biosample_summary="Homo sapiens fibroblast of dermis" and target="H4K20me1"]
|
|
[2.03, 15.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF949HTC.bed.gz | 544.03 KB | 6bdf5ee725d6a4e791d341499bd389d3 |
| ENCFF949HTC.bed.gz.dvc | 100.0 B | e0cf64c14f0046d0b91be6a86b2d397f |
| ENCFF949HTC.tabix.bed.gz | 261.8 KB | 3453c67bad1182e1ca6b39f9e201dd56 |
| ENCFF949HTC.tabix.bed.gz.dvc | 106.0 B | 28ede7d724bf784b933bf8f8a0c018f3 |
| ENCFF949HTC.tabix.bed.gz.tbi | 82.35 KB | b5a3f455749add3cc6f7f04259c1e9e4 |
| ENCFF949HTC.tabix.bed.gz.tbi.dvc | 109.0 B | 21c09e8ce4b159e8aac99451ea8b59c6 |
| genomic_resource.yaml | 4.47 KB | aa73fb9000f6bf5ecc2d818643bff7b3 |
| genomic_resource_original.yaml | 4.35 KB | 61719178805fde0a527e3c3c66b180f9 |
| statistics/ |