Resource
| Id | Histone_ChIP-seq/ENCSR000ARF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARF [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H2AFZ"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN601EVX|/analyses/ENCAN601EVX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN601EVX|/analyses/ENCAN601EVX/} has in progress subobject document {903b88ff-6c6a-4b12-8bd5-53ce947f60da|/documents/903b88ff-6c6a-4b12-8bd5-53ce947f60da/} audit_warning: Processed alignments file {ENCFF338WQQ|/files/ENCFF338WQQ/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 17045512 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF940IDG|/files/ENCFF940IDG/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 14833881 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARF | float |
Histone_ChIP-seq_ENCSR000ARF |
Histone_ChIP-seq ENCSR000ARF [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H2AFZ"]
|
 |
[1.94, 46.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 70882299 | 2.20% | 99640 |
| chr1 | 6709032 | 2.69% | 9230 |
| chr2 | 5854939 | 2.42% | 8457 |
| chr3 | 4553223 | 2.30% | 6593 |
| chr4 | 3765598 | 1.98% | 5709 |
| chr5 | 4049444 | 2.23% | 5892 |
| chr6 | 4641501 | 2.72% | 6585 |
| chr7 | 3509712 | 2.20% | 5103 |
| chr8 | 3224077 | 2.22% | 4719 |
| chr9 | 2884491 | 2.08% | 4019 |
| chr10 | 3197832 | 2.39% | 4457 |
| chr11 | 3537632 | 2.62% | 4839 |
| chr12 | 3720166 | 2.79% | 5306 |
| chr13 | 2004403 | 1.75% | 3051 |
| chr14 | 2174530 | 2.03% | 2922 |
| chr15 | 2276932 | 2.23% | 2966 |
| chr16 | 2120444 | 2.35% | 2749 |
| chr17 | 2911885 | 3.50% | 3689 |
| chr18 | 1723907 | 2.14% | 2657 |
| chr19 | 2432971 | 4.15% | 2950 |
| chr20 | 1869564 | 2.90% | 2642 |
| chr21 | 815726 | 1.75% | 1164 |
| chr22 | 1102810 | 2.17% | 1408 |
| chrX | 1801480 | 1.15% | 2533 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 99640 | 185 | 6305 | 711.38 | 556 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF360HTG.bed.gz | 2.44 MB | 9e79ae59a6489ad4e8bf960995552c0b |
| ENCFF360HTG.tabix.bed.gz | 1.05 MB | 6c672c8f7597cd5bb1f3e32e2eb66d5b |
| ENCFF360HTG.tabix.bed.gz.tbi | 375.28 KB | 3404ec8b1034b525ebd498e1137c8f17 |
| genomic_resource.yaml | 2.7 KB | 2eb2a23a24d72d2ab602ce2775a1d995 |
| statistics/ |