Resource
| Id | Histone_ChIP-seq/ENCSR000ARC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARC [biosample_summary="Homo sapiens DND-41" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN652VRR|/analyses/ENCAN652VRR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF843LXK|/files/ENCFF843LXK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14713725 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF817MNG|/files/ENCFF817MNG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 27284574 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARC | float |
Histone_ChIP-seq_ENCSR000ARC |
Histone_ChIP-seq ENCSR000ARC [biosample_summary="Homo sapiens DND-41" and target="H4K20me1"]
|
 |
[1.7, 21.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 56921106 | 1.77% | 118350 |
| chr1 | 5733050 | 2.30% | 11755 |
| chr2 | 3932177 | 1.62% | 8240 |
| chr3 | 3116188 | 1.57% | 6589 |
| chr4 | 2027932 | 1.07% | 4112 |
| chr5 | 2374054 | 1.31% | 4966 |
| chr6 | 2480851 | 1.45% | 5433 |
| chr7 | 2943849 | 1.85% | 6368 |
| chr8 | 2303760 | 1.59% | 5020 |
| chr9 | 1871051 | 1.35% | 4051 |
| chr10 | 2845327 | 2.13% | 6183 |
| chr11 | 2738459 | 2.03% | 6259 |
| chr12 | 2620093 | 1.97% | 5413 |
| chr13 | 1314419 | 1.15% | 2598 |
| chr14 | 1916330 | 1.79% | 3962 |
| chr15 | 1172133 | 1.15% | 2668 |
| chr16 | 2975926 | 3.29% | 5694 |
| chr17 | 3309774 | 3.98% | 7148 |
| chr18 | 865794 | 1.08% | 2013 |
| chr19 | 3625887 | 6.19% | 6486 |
| chr20 | 2805523 | 4.35% | 5561 |
| chr21 | 823208 | 1.76% | 1611 |
| chr22 | 2235858 | 4.40% | 4458 |
| chrUn_GL000219v1 | 204 | 0.11% | 1 |
| chrUn_KI270744v1 | 2161 | 1.28% | 5 |
| chrX | 867026 | 0.56% | 1704 |
| chrY | 20072 | 0.04% | 52 |
| 3340 contigs with no values (128729415 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 118350 | 120 | 14805 | 480.96 | 336 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF959CUU.bed.gz | 2.43 MB | a09b71489991d8a0c573d9fc7fe6ff27 |
| ENCFF959CUU.tabix.bed.gz | 1.14 MB | dd170a36e0fc56200af549655eb17d39 |
| ENCFF959CUU.tabix.bed.gz.tbi | 186.65 KB | 9508daab12d15b169567ce5bff460228 |
| genomic_resource.yaml | 2.38 KB | a02a861fa8ce065454a0c380aa2cd028 |
| statistics/ |