Resource
| Id | Histone_ChIP-seq/ENCSR000ARB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ARB [biosample_summary="Homo sapiens DND-41" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN602ZSS|/analyses/ENCAN602ZSS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF543XZD|/files/ENCFF543XZD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 28137255 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF739VFW|/files/ENCFF739VFW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16904703 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ARB | float |
Histone_ChIP-seq_ENCSR000ARB |
Histone_ChIP-seq ENCSR000ARB [biosample_summary="Homo sapiens DND-41" and target="H3K79me2"]
|
 |
[1.56, 52.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 125983343 | 3.92% | 131216 |
| chr1 | 12197910 | 4.90% | 12497 |
| chr2 | 9756193 | 4.03% | 9820 |
| chr3 | 8622175 | 4.35% | 8822 |
| chr4 | 5304755 | 2.79% | 5410 |
| chr5 | 6155536 | 3.39% | 6012 |
| chr6 | 6490060 | 3.80% | 7067 |
| chr7 | 6630169 | 4.16% | 7024 |
| chr8 | 4787104 | 3.30% | 4856 |
| chr9 | 4386691 | 3.17% | 4968 |
| chr10 | 6096073 | 4.56% | 6368 |
| chr11 | 5254417 | 3.89% | 5371 |
| chr12 | 6393239 | 4.80% | 6562 |
| chr13 | 3317963 | 2.90% | 3091 |
| chr14 | 4972358 | 4.65% | 5067 |
| chr15 | 3830740 | 3.76% | 4362 |
| chr16 | 4504317 | 4.99% | 4928 |
| chr17 | 6299823 | 7.57% | 6895 |
| chr18 | 2472225 | 3.08% | 2475 |
| chr19 | 5842861 | 9.97% | 6532 |
| chr20 | 3992115 | 6.19% | 4022 |
| chr21 | 1629370 | 3.49% | 1487 |
| chr22 | 3241848 | 6.38% | 3487 |
| chrX | 3559132 | 2.28% | 3857 |
| chrY | 246269 | 0.43% | 236 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 131216 | 120 | 65691 | 960.12 | 492 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF423NLJ.bed.gz | 2.93 MB | 28f95456dcee043c728fef946b6f99ba |
| ENCFF423NLJ.tabix.bed.gz | 1.31 MB | e4a4ca1081c789e07040b92fba91742c |
| ENCFF423NLJ.tabix.bed.gz.tbi | 126.17 KB | 7c4e8e6b0173af8551188ef2384f01f6 |
| genomic_resource.yaml | 2.37 KB | f767ce0aca7368db2aa8b748d8520d48 |
| statistics/ |