Histone_ChIP-seq_ENCSR000AQY
Histone_ChIP-seq ENCSR000AQY [biosample_summary="Homo sapiens DND-41" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR000AQY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AQY [biosamplesummary="Homo sapiens DND-41" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN024AJY|/analyses/ENCAN024AJY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN024AJY|/analyses/ENCAN024AJY/} has in progress subobject document {8c975f13-7289-4f49-8daf-e707f9807d18|/documents/8c975f13-7289-4f49-8daf-e707f9807d18/} audit_not_compliant: Processed alignments file {ENCFF065CQJ|/files/ENCFF065CQJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 22893582 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF192WKN|/files/ENCFF192WKN/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 17960936 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF065CQJ|/files/ENCFF065CQJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF065CQJ|/files/ENCFF065CQJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.05. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AQY | float |
Histone_ChIP-seq_ENCSR000AQY |
Histone_ChIP-seq ENCSR000AQY [biosample_summary="Homo sapiens DND-41" and target="H3K4me1"]
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[1.67, 71.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF035USI.bed.gz | 1.98 MB | 555ec00bf733d3349013e7a37f38c248 |
| ENCFF035USI.bed.gz.dvc | 101.0 B | 1906360dc257d69ff162259b77b4bfcd |
| ENCFF035USI.tabix.bed.gz | 859.17 KB | e3d35897d34b9555a9efdc9b9332e3be |
| ENCFF035USI.tabix.bed.gz.dvc | 106.0 B | 7d3554e875ad73277220f4f71672927f |
| ENCFF035USI.tabix.bed.gz.tbi | 233.27 KB | 220f1097cbd7d31dab53ca012c21309d |
| ENCFF035USI.tabix.bed.gz.tbi.dvc | 110.0 B | 8406589858c8796b0c83ef68963d8eb3 |
| genomic_resource.yaml | 3.93 KB | 3ca2418b755b80e34a2ea335746296bd |
| genomic_resource_original.yaml | 3.82 KB | 4d722475d95ff3c4e9b498c190d92e61 |
| statistics/ |