Resource

Id Histone_ChIP-seq/ENCSR000AQVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AQV [biosample_summary="Homo sapiens DND-41" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR000AQV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007074/
  • biosample_summary: Homo sapiens DND-41
  • date_created: 2013-11-07T22:15:57.812974+00:00
  • date_released: 2012-03-06
  • doi: 10.17989/ENCSR000AQV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AQV float

Histone_ChIP-seq_ENCSR000AQV
Histone_ChIP-seq ENCSR000AQV [biosample_summary="Homo sapiens DND-41" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AQV [1.72, 43.1]
n
37,233,865
mean
9.74
sd
5.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 372338651.16% 58765
chr1 3689170 1.48% 5556
chr1_KI270713v1_random 154 0.38% 1
chr2 2949265 1.22% 4752
chr3 2658374 1.34% 4521
chr4 2005548 1.05% 3670
chr5 2287962 1.26% 3946
chr5_GL000208v1_random 593 0.64% 2
chr6 2181982 1.28% 3352
chr7 1713145 1.08% 2750
chr8 1444579 1.00% 2414
chr9 1188507 0.86% 1827
chr10 1593861 1.19% 2411
chr11 1737154 1.29% 2635
chr12 1922300 1.44% 2915
chr13 1072684 0.94% 1838
chr14 1267719 1.18% 1876
chr15 1041988 1.02% 1512
chr16 1145332 1.27% 1641
chr17 1639650 1.97% 2359
chr17_GL000205v2_random 1468 0.79% 2
chr18 722465 0.90% 1204
chr19 1691249 2.89% 2421
chr20 875500 1.36% 1299
chr21 575521 1.23% 1039
chr22 663540 1.31% 953
chr22_KI270733v1_random 595 0.33% 2
chrUn_GL000195v1 575 0.31% 2
chrUn_GL000219v1 3124 1.74% 5
chrUn_KI270519v1 197 0.14% 1
chrUn_KI270538v1 878 0.96% 3
chrUn_KI270587v1 459 15.46% 1
chrX 1067945 0.68% 1721
chrY 90382 0.16% 134
3333 contigs with no values (127983790 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 58765 145 4818 633.61 442
global segment-length histogram

Files

Filename Size md5
ENCFF845ASZ.bed.gz 1.39 MB 4b8c4892ff9218c97f281215c7d0b39d
ENCFF845ASZ.tabix.bed.gz 630.29 KB 56482ade20cbbe99d7a9f3045c44223a
ENCFF845ASZ.tabix.bed.gz.tbi 229.21 KB c9c07e33385edf045c63da81559cbe00
genomic_resource.yaml 1.85 KB 78c3304e6cb97c7386ae666ca0aade45
statistics/