Histone_ChIP-seq_ENCSR000AQR
Histone_ChIP-seq ENCSR000AQR [biosample_summary="Homo sapiens astrocyte" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR000AQR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AQR [biosamplesummary="Homo sapiens astrocyte" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN510RDO|/analyses/ENCAN510RDO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF945TQL|/files/ENCFF945TQL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15780202 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF755ZOD|/files/ENCFF755ZOD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 38280945 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF788VSD|/files/ENCFF788VSD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF788VSD|/files/ENCFF788VSD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AQR | float |
Histone_ChIP-seq_ENCSR000AQR |
Histone_ChIP-seq ENCSR000AQR [biosample_summary="Homo sapiens astrocyte" and target="H3K9me3"]
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[1.88, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF755ZLD.bed.gz | 756.39 KB | 7176fcb0260b53071254c1bd3caf191d |
| ENCFF755ZLD.bed.gz.dvc | 100.0 B | f9bb6c5befcfcbc7b7ed4b0f6e957b33 |
| ENCFF755ZLD.tabix.bed.gz | 385.49 KB | 05e9bb9b7dcc8f4c9c092ead56989f26 |
| ENCFF755ZLD.tabix.bed.gz.dvc | 106.0 B | c4eff88f004894583a268a383d218462 |
| ENCFF755ZLD.tabix.bed.gz.tbi | 199.94 KB | 89fe2a51a32dda72c7a0f418b04d05db |
| ENCFF755ZLD.tabix.bed.gz.tbi.dvc | 110.0 B | e73825aa5812f40a2649702dd8aae8a5 |
| genomic_resource.yaml | 3.67 KB | ab5793beff93130e97743d5dbabee5ea |
| genomic_resource_original.yaml | 3.56 KB | 9c3e83c47fe7203559de93d2d800684c |
| statistics/ |