Histone_ChIP-seq_ENCSR000AQQ
Histone_ChIP-seq ENCSR000AQQ [biosample_summary="Homo sapiens astrocyte" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR000AQQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AQQ [biosamplesummary="Homo sapiens astrocyte" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN866XGP|/analyses/ENCAN866XGP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF490VHZ|/files/ENCFF490VHZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15723809 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF169JQT|/files/ENCFF169JQT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 26810495 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF490VHZ|/files/ENCFF490VHZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF490VHZ|/files/ENCFF490VHZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AQQ | float |
Histone_ChIP-seq_ENCSR000AQQ |
Histone_ChIP-seq ENCSR000AQQ [biosample_summary="Homo sapiens astrocyte" and target="H3K79me2"]
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[1.76, 28.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF100ZHU.bed.gz | 3.36 MB | 6a54a7cd2302b03a0d4245583625cb00 |
| ENCFF100ZHU.bed.gz.dvc | 101.0 B | a310051213828aa3ced5c30daf2bcaca |
| ENCFF100ZHU.tabix.bed.gz | 1.49 MB | 20fc3a5b785b25f3ae2043cfa808a955 |
| ENCFF100ZHU.tabix.bed.gz.dvc | 107.0 B | 8ef364e6e93c26ecb991f670bbf86654 |
| ENCFF100ZHU.tabix.bed.gz.tbi | 149.27 KB | 2f3b5103eeb840d23215f5ea706cfaf5 |
| ENCFF100ZHU.tabix.bed.gz.tbi.dvc | 110.0 B | aa036397f05cb5ce860a8a39ec19edf6 |
| genomic_resource.yaml | 3.68 KB | 91f781bf817d004537757a182dd0ff2e |
| genomic_resource_original.yaml | 3.57 KB | e16aee414064e617956d8fc9985f5ac8 |
| statistics/ |