Histone_ChIP-seq_ENCSR000APY
Histone_ChIP-seq ENCSR000APY [biosample_summary="Homo sapiens H1" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR000APY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000APY [biosamplesummary="Homo sapiens H1" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN022TXK|/analyses/ENCAN022TXK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF996IVI|/files/ENCFF996IVI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 21692486 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF263PXM|/files/ENCFF263PXM/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 32432355 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF996IVI|/files/ENCFF996IVI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF996IVI|/files/ENCFF996IVI/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APY | float |
Histone_ChIP-seq_ENCSR000APY |
Histone_ChIP-seq ENCSR000APY [biosample_summary="Homo sapiens H1" and target="H3K79me2"]
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[1.93, 46.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF792SGR.bed.gz | 2.24 MB | 88e887bf1ae6a4c15f7c5d1ba48ff61e |
| ENCFF792SGR.bed.gz.dvc | 101.0 B | ec0edd29571fa2f0dbf0ca5df1b251cd |
| ENCFF792SGR.tabix.bed.gz | 996.25 KB | 6974a3bcb3b2e7a00807e960812fcaca |
| ENCFF792SGR.tabix.bed.gz.dvc | 107.0 B | 11b2b945c3e08bcdb9f534727019161c |
| ENCFF792SGR.tabix.bed.gz.tbi | 128.22 KB | 943b9391170335c9fd06c1e387261b8f |
| ENCFF792SGR.tabix.bed.gz.tbi.dvc | 110.0 B | b70903b8bea6ead177dea5e1bcbb2cf0 |
| genomic_resource.yaml | 3.7 KB | aafefb6de3b1627197f0a644c01b5881 |
| genomic_resource_original.yaml | 3.59 KB | 947c965f60fbfae5567ce2c6ff2df2fd |
| statistics/ |