Histone_ChIP-seq_ENCSR000APV
Histone_ChIP-seq ENCSR000APV [biosample_summary="Homo sapiens HepG2" and target="H3K4me1"]
×
| Id: | Histone_ChIP-seq/ENCSR000APV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000APV [biosamplesummary="Homo sapiens HepG2" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN243QKR|/analyses/ENCAN243QKR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN243QKR|/analyses/ENCAN243QKR/} has in progress subobject document {eb4a0ea9-8eff-4eee-975e-117ebd6ee9f3|/documents/eb4a0ea9-8eff-4eee-975e-117ebd6ee9f3/} audit_not_compliant: Processed alignments file {ENCFF176CMB|/files/ENCFF176CMB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 24912668 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF678ZFC|/files/ENCFF678ZFC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 24927427 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APV | float |
Histone_ChIP-seq_ENCSR000APV |
Histone_ChIP-seq ENCSR000APV [biosample_summary="Homo sapiens HepG2" and target="H3K4me1"]
|
|
[1.71, 31.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF413EGR.bed.gz | 3.34 MB | ceddc5c3830f5b3078365625b3de52b9 |
| ENCFF413EGR.bed.gz.dvc | 101.0 B | 8de19b04a16863c60e4a7bc813ede89b |
| ENCFF413EGR.tabix.bed.gz | 1.38 MB | c34dc2cb8746769730dc52e0c9d5d4ee |
| ENCFF413EGR.tabix.bed.gz.dvc | 107.0 B | 0e2b2a5f54361209626a29e583bfe456 |
| ENCFF413EGR.tabix.bed.gz.tbi | 290.61 KB | 53f69d8f12f50c845e769604414ebeec |
| ENCFF413EGR.tabix.bed.gz.tbi.dvc | 110.0 B | 5b477b038bef6b0be2a68081ad2ac192 |
| genomic_resource.yaml | 2.72 KB | c34fe8d51df65c6b89382135e7e34a29 |
| genomic_resource_original.yaml | 2.61 KB | 447479d3c9913e8a9ddcbeefeaf2b6d4 |
| statistics/ |