Resource
| Id | Histone_ChIP-seq/ENCSR000APV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APV [biosample_summary="Homo sapiens HepG2" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN243QKR|/analyses/ENCAN243QKR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN243QKR|/analyses/ENCAN243QKR/} has in progress subobject document {eb4a0ea9-8eff-4eee-975e-117ebd6ee9f3|/documents/eb4a0ea9-8eff-4eee-975e-117ebd6ee9f3/} audit_not_compliant: Processed alignments file {ENCFF176CMB|/files/ENCFF176CMB/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 24912668 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF678ZFC|/files/ENCFF678ZFC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 24927427 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APV | float |
Histone_ChIP-seq_ENCSR000APV |
Histone_ChIP-seq ENCSR000APV [biosample_summary="Homo sapiens HepG2" and target="H3K4me1"]
|
 |
[1.71, 31.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 220982352 | 6.87% | 127048 |
| chr1 | 21486050 | 8.63% | 12124 |
| chr2 | 18678153 | 7.71% | 10710 |
| chr3 | 14109190 | 7.12% | 8048 |
| chr4 | 8343036 | 4.39% | 5167 |
| chr5 | 10570027 | 5.82% | 6153 |
| chr6 | 13378251 | 7.83% | 7846 |
| chr7 | 10613304 | 6.66% | 6431 |
| chr8 | 8992520 | 6.20% | 5233 |
| chr9 | 9262900 | 6.69% | 5134 |
| chr10 | 10719598 | 8.01% | 6156 |
| chr11 | 10368785 | 7.68% | 5816 |
| chr12 | 10519851 | 7.89% | 6208 |
| chr13 | 5102829 | 4.46% | 3007 |
| chr14 | 7887374 | 7.37% | 4534 |
| chr15 | 7117395 | 6.98% | 4261 |
| chr16 | 9519494 | 10.54% | 5141 |
| chr17 | 12160461 | 14.61% | 6578 |
| chr18 | 4586880 | 5.71% | 2754 |
| chr19 | 7741965 | 13.21% | 4740 |
| chr20 | 7382001 | 11.45% | 3920 |
| chr21 | 2564719 | 5.49% | 1434 |
| chr22 | 5269633 | 10.37% | 2715 |
| chrX | 4431816 | 2.84% | 2830 |
| chrY | 176120 | 0.31% | 108 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127048 | 323 | 65258 | 1739.36 | 1249 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF413EGR.bed.gz | 3.34 MB | ceddc5c3830f5b3078365625b3de52b9 |
| ENCFF413EGR.tabix.bed.gz | 1.38 MB | c34dc2cb8746769730dc52e0c9d5d4ee |
| ENCFF413EGR.tabix.bed.gz.tbi | 290.61 KB | 53f69d8f12f50c845e769604414ebeec |
| genomic_resource.yaml | 2.72 KB | c34fe8d51df65c6b89382135e7e34a29 |
| statistics/ |