Resource
| Id | Histone_ChIP-seq/ENCSR000APL |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APL [biosample_summary="Homo sapiens osteoblast" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN844PGO|/analyses/ENCAN844PGO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF749DVM|/files/ENCFF749DVM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 39381094 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF103BOU|/files/ENCFF103BOU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 39787040 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APL | float |
Histone_ChIP-seq_ENCSR000APL |
Histone_ChIP-seq ENCSR000APL [biosample_summary="Homo sapiens osteoblast" and target="H3K9me3"]
|
 |
[1.46, 12.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14814652 | 0.46% | 48161 |
| chr1 | 680325 | 0.27% | 2235 |
| chr2 | 1077084 | 0.44% | 3727 |
| chr3 | 887094 | 0.45% | 2976 |
| chr4 | 1091322 | 0.57% | 3712 |
| chr5 | 920174 | 0.51% | 3061 |
| chr6 | 687095 | 0.40% | 2369 |
| chr7 | 778795 | 0.49% | 2565 |
| chr8 | 806106 | 0.56% | 2714 |
| chr9 | 480189 | 0.35% | 1549 |
| chr10 | 711383 | 0.53% | 2362 |
| chr11 | 541484 | 0.40% | 1836 |
| chr12 | 540345 | 0.41% | 1742 |
| chr13 | 667071 | 0.58% | 2367 |
| chr14 | 520656 | 0.49% | 1831 |
| chr15 | 403140 | 0.40% | 1263 |
| chr16 | 499385 | 0.55% | 1559 |
| chr17 | 245036 | 0.29% | 776 |
| chr18 | 521373 | 0.65% | 1791 |
| chr19 | 1161454 | 1.98% | 2472 |
| chr20 | 277456 | 0.43% | 920 |
| chr21 | 480024 | 1.03% | 1465 |
| chr22 | 157393 | 0.31% | 484 |
| chrX | 654151 | 0.42% | 2325 |
| chrY | 26117 | 0.05% | 60 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 48161 | 145 | 5358 | 307.61 | 262 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF545SGL.bed.gz | 846.2 KB | 9353b1e562ad30008b89bdc588a9c612 |
| ENCFF545SGL.tabix.bed.gz | 446.72 KB | 63777c25379937012a3b4c8787d4ac30 |
| ENCFF545SGL.tabix.bed.gz.tbi | 231.27 KB | 0b84ddf61654d359c0c6fd45105515cf |
| genomic_resource.yaml | 2.37 KB | 425ca2074908d9715ae590186f7a1c5c |
| statistics/ |