Resource
| Id | Histone_ChIP-seq/ENCSR000APG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APG [biosample_summary="Homo sapiens osteoblast" and target="H2AFZ"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN270PBH|/analyses/ENCAN270PBH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF264FWL|/files/ENCFF264FWL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF264FWL|/files/ENCFF264FWL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.97. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APG | float |
Histone_ChIP-seq_ENCSR000APG |
Histone_ChIP-seq ENCSR000APG [biosample_summary="Homo sapiens osteoblast" and target="H2AFZ"]
|
 |
[1.7, 43.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 58114513 | 1.81% | 112232 |
| chr1 | 5485750 | 2.20% | 10341 |
| chr2 | 4895390 | 2.02% | 9647 |
| chr3 | 3981931 | 2.01% | 7839 |
| chr4 | 3352312 | 1.76% | 6785 |
| chr5 | 3535670 | 1.95% | 7011 |
| chr6 | 4311859 | 2.52% | 8247 |
| chr7 | 3015360 | 1.89% | 6130 |
| chr8 | 2904357 | 2.00% | 5806 |
| chr9 | 2259289 | 1.63% | 4366 |
| chr10 | 2611592 | 1.95% | 4966 |
| chr11 | 2579035 | 1.91% | 4880 |
| chr12 | 3127574 | 2.35% | 6039 |
| chr13 | 1679811 | 1.47% | 3383 |
| chr14 | 1720429 | 1.61% | 3166 |
| chr15 | 1857847 | 1.82% | 3525 |
| chr16 | 1557359 | 1.72% | 2864 |
| chr17 | 2294380 | 2.76% | 4158 |
| chr17_GL000205v2_random | 1650 | 0.89% | 2 |
| chr18 | 1366596 | 1.70% | 2790 |
| chr19 | 1808778 | 3.09% | 3038 |
| chr20 | 1269087 | 1.97% | 2358 |
| chr21 | 667506 | 1.43% | 1360 |
| chr22 | 793128 | 1.56% | 1472 |
| chrUn_GL000195v1 | 1360 | 0.74% | 3 |
| chrUn_GL000219v1 | 1087 | 0.61% | 3 |
| chrUn_GL000220v1 | 294 | 0.18% | 1 |
| chrX | 1035082 | 0.66% | 2052 |
| 3339 contigs with no values (185595013 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 112232 | 165 | 5373 | 517.81 | 401 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF158BJO.bed.gz | 2.53 MB | 993b3f0b4e2d4100f7dced838105c074 |
| ENCFF158BJO.tabix.bed.gz | 1.14 MB | 0f223e7f84c4499c54f9719ad2625a00 |
| ENCFF158BJO.tabix.bed.gz.tbi | 376.27 KB | 93887a6efa526b3fe6ba3e48b24ec0c7 |
| genomic_resource.yaml | 2.68 KB | ae72e189a5614912b1af2aa274955f10 |
| statistics/ |