Histone_ChIP-seq_ENCSR000APG
Histone_ChIP-seq ENCSR000APG [biosample_summary="Homo sapiens osteoblast" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR000APG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000APG [biosamplesummary="Homo sapiens osteoblast" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN270PBH|/analyses/ENCAN270PBH/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF264FWL|/files/ENCFF264FWL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF264FWL|/files/ENCFF264FWL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.97. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APG | float |
Histone_ChIP-seq_ENCSR000APG |
Histone_ChIP-seq ENCSR000APG [biosample_summary="Homo sapiens osteoblast" and target="H2AFZ"]
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[1.7, 43.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF158BJO.bed.gz | 2.53 MB | 993b3f0b4e2d4100f7dced838105c074 |
| ENCFF158BJO.bed.gz.dvc | 101.0 B | 9745436199c033fd504454b3f6f64984 |
| ENCFF158BJO.tabix.bed.gz | 1.14 MB | 0f223e7f84c4499c54f9719ad2625a00 |
| ENCFF158BJO.tabix.bed.gz.dvc | 107.0 B | 64547f598ab503815387b24a0eef4fd2 |
| ENCFF158BJO.tabix.bed.gz.tbi | 376.27 KB | 93887a6efa526b3fe6ba3e48b24ec0c7 |
| ENCFF158BJO.tabix.bed.gz.tbi.dvc | 110.0 B | c989cb56e50d29fe15a2914ef52f44ba |
| genomic_resource.yaml | 2.68 KB | ae72e189a5614912b1af2aa274955f10 |
| genomic_resource_original.yaml | 2.57 KB | 142e89a754299d06d0d5381d4a4f26aa |
| statistics/ |