Resource
| Id | Histone_ChIP-seq/ENCSR000APE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APE [biosample_summary="Homo sapiens K562" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN130LOX|/analyses/ENCAN130LOX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF159LBN|/files/ENCFF159LBN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 18912253 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF516VWS|/files/ENCFF516VWS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 40887276 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APE | float |
Histone_ChIP-seq_ENCSR000APE |
Histone_ChIP-seq ENCSR000APE [biosample_summary="Homo sapiens K562" and target="H3K9me3"]
|
 |
[1.58, 11.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1590149 | 0.05% | 5889 |
| chr1 | 173823 | 0.07% | 662 |
| chr2 | 87186 | 0.04% | 345 |
| chr3 | 85310 | 0.04% | 326 |
| chr4 | 58353 | 0.03% | 248 |
| chr5 | 68632 | 0.04% | 284 |
| chr6 | 111980 | 0.07% | 419 |
| chr7 | 169535 | 0.11% | 613 |
| chr8 | 64778 | 0.04% | 227 |
| chr9 | 49753 | 0.04% | 188 |
| chr10 | 61756 | 0.05% | 251 |
| chr11 | 56148 | 0.04% | 210 |
| chr12 | 75409 | 0.06% | 262 |
| chr13 | 34695 | 0.03% | 152 |
| chr14 | 11688 | 0.01% | 42 |
| chr15 | 34330 | 0.03% | 129 |
| chr16 | 76599 | 0.08% | 235 |
| chr17 | 37089 | 0.04% | 134 |
| chr18 | 27268 | 0.03% | 108 |
| chr19 | 206403 | 0.35% | 676 |
| chr20 | 18903 | 0.03% | 72 |
| chr21 | 40310 | 0.09% | 150 |
| chr22 | 23814 | 0.05% | 89 |
| chrX | 13163 | 0.01% | 54 |
| chrY | 3224 | 0.01% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 5889 | 135 | 4658 | 270.02 | 219 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF894VEM.bed.gz | 111.8 KB | fbb04246fcb4ebaf8eaf9109ca5b237d |
| ENCFF894VEM.tabix.bed.gz | 59.9 KB | 2bbf17a1df372cc396a6759b1cafb21d |
| ENCFF894VEM.tabix.bed.gz.tbi | 44.55 KB | 2f1e80c8238245fea15b9a62e71e2bd2 |
| genomic_resource.yaml | 2.35 KB | 08ddea87d1e3afd1dc5a45df96d26861 |
| statistics/ |