Resource
| Id | Histone_ChIP-seq/ENCSR000APA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000APA [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H2AFZ"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN073EWO|/analyses/ENCAN073EWO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF306XQT|/files/ENCFF306XQT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14952165 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF489CMU|/files/ENCFF489CMU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16260844 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000APA | float |
Histone_ChIP-seq_ENCSR000APA |
Histone_ChIP-seq ENCSR000APA [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H2AFZ"]
|
 |
[1.87, 33.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34197882 | 1.06% | 72699 |
| chr1 | 3265180 | 1.31% | 6854 |
| chr2 | 2819138 | 1.16% | 6051 |
| chr3 | 2142158 | 1.08% | 4566 |
| chr4 | 1609312 | 0.85% | 3381 |
| chr5 | 1798953 | 0.99% | 3900 |
| chr6 | 2366008 | 1.39% | 4952 |
| chr7 | 1609407 | 1.01% | 3496 |
| chr8 | 1530984 | 1.05% | 3299 |
| chr9 | 1412763 | 1.02% | 3010 |
| chr10 | 1631964 | 1.22% | 3519 |
| chr11 | 1617214 | 1.20% | 3401 |
| chr12 | 1767352 | 1.33% | 3787 |
| chr13 | 891013 | 0.78% | 1983 |
| chr14 | 1106885 | 1.03% | 2281 |
| chr15 | 1144893 | 1.12% | 2343 |
| chr16 | 1098284 | 1.22% | 2320 |
| chr17 | 1629744 | 1.96% | 3362 |
| chr17_GL000205v2_random | 1629 | 0.88% | 1 |
| chr18 | 692990 | 0.86% | 1538 |
| chr19 | 1466560 | 2.50% | 2916 |
| chr20 | 811539 | 1.26% | 1748 |
| chr21 | 376764 | 0.81% | 846 |
| chr22 | 617484 | 1.22% | 1327 |
| chr22_KI270733v1_random | 157 | 0.09% | 1 |
| chrUn_GL000195v1 | 703 | 0.38% | 2 |
| chrUn_GL000219v1 | 2805 | 1.57% | 4 |
| chrX | 763057 | 0.49% | 1767 |
| chrY | 22942 | 0.04% | 44 |
| 3338 contigs with no values (128349628 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 72699 | 145 | 4532 | 470.4 | 351 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF428MOV.bed.gz | 1.57 MB | 9be3273e985d0c0b9010c3eb624811ae |
| ENCFF428MOV.tabix.bed.gz | 758.49 KB | c712e4eba21ffd48bc108f62d071eb21 |
| ENCFF428MOV.tabix.bed.gz.tbi | 298.79 KB | 1289abf628190a6a9aa75e068266c41d |
| genomic_resource.yaml | 2.46 KB | 714b56986a4289bbdd223622bb54c76f |
| statistics/ |