Histone_ChIP-seq_ENCSR000AOU
Histone_ChIP-seq ENCSR000AOU [biosample_summary="Homo sapiens astrocyte" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000AOU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AOU [biosamplesummary="Homo sapiens astrocyte" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN144PPN|/analyses/ENCAN144PPN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF025QGZ|/files/ENCFF025QGZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7951862 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF962TLU|/files/ENCFF962TLU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13999561 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF962TLU|/files/ENCFF962TLU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF962TLU|/files/ENCFF962TLU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOU | float |
Histone_ChIP-seq_ENCSR000AOU |
Histone_ChIP-seq ENCSR000AOU [biosample_summary="Homo sapiens astrocyte" and target="H3K4me3"]
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[2.09, 67] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF375FQE.bed.gz | 1.01 MB | bb9ea5040d1601a5f1c1334a776edabe |
| ENCFF375FQE.bed.gz.dvc | 101.0 B | 0a2d924c3627503a9c94e8f951029043 |
| ENCFF375FQE.tabix.bed.gz | 440.58 KB | bcc32e48926f2f8b3a9d05897e8754d1 |
| ENCFF375FQE.tabix.bed.gz.dvc | 106.0 B | 501f3b02554a05237784200be8c213a6 |
| ENCFF375FQE.tabix.bed.gz.tbi | 200.59 KB | 6e62809f6f096a51b1b2f2b563312869 |
| ENCFF375FQE.tabix.bed.gz.tbi.dvc | 110.0 B | 3dc556968655dec67942e15448574b83 |
| genomic_resource.yaml | 3.68 KB | 9f55022ef92e7aa638b1509120442fca |
| genomic_resource_original.yaml | 3.57 KB | d98099979dcb00c30cfb62205fba7097 |
| statistics/ |