Resource
| Id | Histone_ChIP-seq/ENCSR000AOT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOT [biosample_summary="Homo sapiens astrocyte" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN671ODI|/analyses/ENCAN671ODI/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF952AKQ|/files/ENCFF952AKQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9983246 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF040HUE|/files/ENCFF040HUE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11041896 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOT | float |
Histone_ChIP-seq_ENCSR000AOT |
Histone_ChIP-seq ENCSR000AOT [biosample_summary="Homo sapiens astrocyte" and target="H3K4me1"]
|
 |
[2.05, 19.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 98736259 | 3.07% | 129916 |
| chr1 | 9368726 | 3.76% | 12069 |
| chr1_KI270713v1_random | 1071 | 2.63% | 2 |
| chr2 | 8249926 | 3.41% | 10713 |
| chr3 | 6829272 | 3.44% | 8876 |
| chr4 | 4560086 | 2.40% | 6315 |
| chr5 | 5961812 | 3.28% | 7670 |
| chr6 | 5715732 | 3.35% | 7716 |
| chr7 | 4620261 | 2.90% | 6332 |
| chr8 | 4633600 | 3.19% | 6086 |
| chr9 | 4435158 | 3.20% | 5662 |
| chr10 | 5052504 | 3.78% | 6521 |
| chr11 | 5432602 | 4.02% | 6908 |
| chr12 | 4838034 | 3.63% | 6405 |
| chr13 | 2559875 | 2.24% | 3424 |
| chr14 | 3127863 | 2.92% | 4134 |
| chr15 | 3587769 | 3.52% | 4541 |
| chr16 | 3184084 | 3.52% | 4184 |
| chr17 | 4501493 | 5.41% | 5664 |
| chr17_GL000205v2_random | 1042 | 0.56% | 3 |
| chr18 | 2189243 | 2.72% | 2977 |
| chr19 | 2508242 | 4.28% | 3526 |
| chr20 | 2546677 | 3.95% | 3301 |
| chr21 | 1174865 | 2.52% | 1511 |
| chr22 | 2002140 | 3.94% | 2426 |
| chrUn_GL000195v1 | 2319 | 1.27% | 4 |
| chrUn_GL000219v1 | 684 | 0.38% | 1 |
| chrUn_KI270438v1 | 655 | 0.58% | 2 |
| chrX | 1617319 | 1.04% | 2880 |
| chrY | 33205 | 0.06% | 63 |
| 3337 contigs with no values (128376150 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 129916 | 190 | 14848 | 760 | 595 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF388GVC.bed.gz | 2.97 MB | 9ddcd305cff466c9f0e7acc75524a688 |
| ENCFF388GVC.tabix.bed.gz | 1.34 MB | fb5045bde83c63f41c82e1d71c3db197 |
| ENCFF388GVC.tabix.bed.gz.tbi | 370.82 KB | 7c436d10afc04b113402f4f69ac33b06 |
| genomic_resource.yaml | 2.38 KB | 13b5f40e7d98f76c3c24c0bfc5855c51 |
| statistics/ |