Resource
| Id | Histone_ChIP-seq/ENCSR000AOS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOS [biosample_summary="Homo sapiens astrocyte" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN325UGJ|/analyses/ENCAN325UGJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF920ITU|/files/ENCFF920ITU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11743053 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF772HIV|/files/ENCFF772HIV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11186797 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOS | float |
Histone_ChIP-seq_ENCSR000AOS |
Histone_ChIP-seq ENCSR000AOS [biosample_summary="Homo sapiens astrocyte" and target="H3K36me3"]
|
 |
[2.08, 14.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55982686 | 1.74% | 122389 |
| chr1 | 5818736 | 2.34% | 12330 |
| chr1_KI270711v1_random | 271 | 0.64% | 1 |
| chr2 | 4759265 | 1.97% | 10473 |
| chr3 | 3873425 | 1.95% | 8559 |
| chr4 | 2424555 | 1.27% | 5587 |
| chr5 | 3442321 | 1.90% | 7312 |
| chr6 | 2606670 | 1.53% | 6031 |
| chr7 | 2489722 | 1.56% | 5497 |
| chr8 | 2003417 | 1.38% | 4550 |
| chr9 | 2341221 | 1.69% | 5122 |
| chr10 | 2647110 | 1.98% | 5721 |
| chr11 | 2857989 | 2.12% | 6078 |
| chr12 | 3332225 | 2.50% | 7141 |
| chr13 | 1298426 | 1.14% | 2978 |
| chr14 | 2072817 | 1.94% | 4503 |
| chr14_GL000225v1_random | 226 | 0.11% | 1 |
| chr15 | 2195481 | 2.15% | 4752 |
| chr16 | 2036764 | 2.25% | 4344 |
| chr17 | 2910770 | 3.50% | 6125 |
| chr17_GL000205v2_random | 240 | 0.13% | 1 |
| chr18 | 932469 | 1.16% | 2246 |
| chr19 | 1992429 | 3.40% | 4385 |
| chr20 | 1524180 | 2.37% | 3257 |
| chr21 | 657252 | 1.41% | 1423 |
| chr22 | 1132475 | 2.23% | 2375 |
| chrUn_GL000195v1 | 450 | 0.25% | 1 |
| chrUn_KI270438v1 | 1166 | 1.04% | 4 |
| chrX | 595567 | 0.38% | 1496 |
| chrY | 35047 | 0.06% | 96 |
| 3337 contigs with no values (128342710 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 122389 | 130 | 7653 | 457.42 | 357 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF510SOR.bed.gz | 2.46 MB | c57e6a643dd0b0b5179418f2b7368c4b |
| ENCFF510SOR.tabix.bed.gz | 1.18 MB | f5dfbec7f61b91bfc1434c88ac478037 |
| ENCFF510SOR.tabix.bed.gz.tbi | 173.84 KB | 757a1a96c167ea61a4b34dc722577115 |
| genomic_resource.yaml | 2.39 KB | 7eb8b91be83b36acc6ed67e0dc1d781f |
| statistics/ |