Resource
| Id | Histone_ChIP-seq/ENCSR000AOR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOR [biosample_summary="Homo sapiens astrocyte" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN495AWQ|/analyses/ENCAN495AWQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF799SNE|/files/ENCFF799SNE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7105909 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF240AXQ|/files/ENCFF240AXQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15043679 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOR | float |
Histone_ChIP-seq_ENCSR000AOR |
Histone_ChIP-seq ENCSR000AOR [biosample_summary="Homo sapiens astrocyte" and target="H3K27me3"]
|
 |
[2.1, 17.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45407708 | 1.41% | 93102 |
| chr1 | 4787730 | 1.92% | 9735 |
| chr2 | 3530027 | 1.46% | 7214 |
| chr3 | 2681183 | 1.35% | 5681 |
| chr4 | 1534884 | 0.81% | 3042 |
| chr5 | 2038510 | 1.12% | 4207 |
| chr6 | 2292347 | 1.34% | 4555 |
| chr7 | 2035198 | 1.28% | 4024 |
| chr8 | 1679936 | 1.16% | 3571 |
| chr9 | 2468520 | 1.78% | 4884 |
| chr10 | 2542425 | 1.90% | 5115 |
| chr11 | 3090216 | 2.29% | 6523 |
| chr12 | 2131115 | 1.60% | 4229 |
| chr13 | 992523 | 0.87% | 2036 |
| chr14 | 1436916 | 1.34% | 2961 |
| chr15 | 1906441 | 1.87% | 3938 |
| chr16 | 1389776 | 1.54% | 3017 |
| chr17 | 2791053 | 3.35% | 5360 |
| chr18 | 855896 | 1.06% | 1923 |
| chr19 | 1125467 | 1.92% | 2343 |
| chr20 | 1992613 | 3.09% | 4140 |
| chr21 | 676317 | 1.45% | 1394 |
| chr22 | 1082803 | 2.13% | 2403 |
| chrX | 343117 | 0.22% | 797 |
| chrY | 2695 | <0.01% | 10 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 93102 | 150 | 25987 | 487.72 | 348 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF809NLZ.bed.gz | 1.72 MB | 86e9103a7bb50b4f37d23282b2746074 |
| ENCFF809NLZ.tabix.bed.gz | 880.41 KB | 0e6238240bc530522a05c305b018bb66 |
| ENCFF809NLZ.tabix.bed.gz.tbi | 209.0 KB | 04e475afdaf2ef32acc731e66e41c61c |
| genomic_resource.yaml | 2.38 KB | 96d2d3c452037924b0f132416e1bb493 |
| statistics/ |