Resource
| Id | Histone_ChIP-seq/ENCSR000AOM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOM [biosample_summary="Homo sapiens HepG2" and target="H3K79me2"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN317LGO|/analyses/ENCAN317LGO/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF325UJS|/files/ENCFF325UJS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 23380339 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOM | float |
Histone_ChIP-seq_ENCSR000AOM |
Histone_ChIP-seq ENCSR000AOM [biosample_summary="Homo sapiens HepG2" and target="H3K79me2"]
|
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[1.84, 33.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 80289046 | 2.50% | 95726 |
| chr1 | 7288866 | 2.93% | 9084 |
| chr2 | 7714312 | 3.19% | 8209 |
| chr3 | 5868440 | 2.96% | 6786 |
| chr4 | 3113931 | 1.64% | 3750 |
| chr5 | 3714191 | 2.05% | 4392 |
| chr6 | 4808254 | 2.82% | 5447 |
| chr7 | 4008419 | 2.52% | 5031 |
| chr8 | 3626717 | 2.50% | 4227 |
| chr9 | 3296225 | 2.38% | 4145 |
| chr10 | 3774735 | 2.82% | 4619 |
| chr11 | 3449317 | 2.55% | 4419 |
| chr12 | 3604963 | 2.70% | 4526 |
| chr13 | 2387989 | 2.09% | 2604 |
| chr14 | 2566413 | 2.40% | 3271 |
| chr15 | 2504916 | 2.46% | 3113 |
| chr16 | 3477646 | 3.85% | 4016 |
| chr17 | 4072507 | 4.89% | 5164 |
| chr18 | 1543918 | 1.92% | 1771 |
| chr19 | 2616384 | 4.46% | 3326 |
| chr20 | 2648007 | 4.11% | 2815 |
| chr21 | 846590 | 1.81% | 905 |
| chr22 | 1738608 | 3.42% | 2132 |
| chrX | 1553932 | 1.00% | 1910 |
| chrY | 63766 | 0.11% | 64 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95726 | 120 | 19816 | 838.74 | 501 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF675FQI.bed.gz | 2.02 MB | f0dae9fa65ae7623828a0456c6b289c8 |
| ENCFF675FQI.tabix.bed.gz | 962.55 KB | 685383fa391b2f63cb82791d1a2f2248 |
| ENCFF675FQI.tabix.bed.gz.tbi | 124.99 KB | 781b13435766303f7ddfb5fba0505f4b |
| genomic_resource.yaml | 1.98 KB | e477e51817e3b446b81ed2d9e9e60a9a |
| statistics/ |
