Resource

Id Histone_ChIP-seq/ENCSR000AOKcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AOK [biosample_summary="Homo sapiens HepG2" and target="H2AFZ"]
Description
Labels
  • accession: ENCSR000AOK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2013-11-07T22:16:23.651311+00:00
  • date_released: 2011-02-10
  • doi: 10.17989/ENCSR000AOK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: As of February 9th, 2017, the control has been changed to ENCSR055XHN, requiring new peaks and signal files.
  • target: H2AFZ

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AOK float

Histone_ChIP-seq_ENCSR000AOK
Histone_ChIP-seq ENCSR000AOK [biosample_summary="Homo sapiens HepG2" and target="H2AFZ"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AOK [2.04, 19.9]
n
12,684,800
mean
5.59
sd
1.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126848000.39% 27723
chr1 1135862 0.46% 2523
chr2 1500377 0.62% 3007
chr3 771095 0.39% 1733
chr4 590515 0.31% 1338
chr5 671396 0.37% 1515
chr6 1046141 0.61% 2132
chr7 531079 0.33% 1205
chr8 474132 0.33% 1072
chr9 402100 0.29% 928
chr10 544498 0.41% 1204
chr11 499976 0.37% 1092
chr12 650402 0.49% 1447
chr13 325879 0.28% 761
chr14 572881 0.54% 1151
chr15 410777 0.40% 889
chr16 442918 0.49% 965
chr17 584099 0.70% 1283
chr17_GL000205v2_random 1579 0.85% 1
chr18 248465 0.31% 572
chr19 354604 0.60% 856
chr20 505956 0.79% 1026
chr21 109413 0.23% 259
chr22 140523 0.28% 332
chrUn_GL000195v1 379 0.21% 1
chrUn_GL000219v1 331 0.18% 1
chrUn_KI270467v1 1835 46.81% 3
chrX 158093 0.10% 409
chrY 9495 0.02% 18
3338 contigs with no values (128525480 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 27723 175 2652 457.56 393
global segment-length histogram

Files

Filename Size md5
ENCFF474NDN.bed.gz 593.08 KB 4b46192ddc2d6d23200ee073dc66de1a
ENCFF474NDN.tabix.bed.gz 285.6 KB e39d123f2798fe7a0d392e1e2135395c
ENCFF474NDN.tabix.bed.gz.tbi 160.94 KB 6018b5e497e963d118b73e79e685ef8b
genomic_resource.yaml 1.47 KB d23e797b888d5239dcf1c9753b14acb4
statistics/