Histone_ChIP-seq_ENCSR000AOH
Histone_ChIP-seq ENCSR000AOH [biosample_summary="Homo sapiens HeLa-S3" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR000AOH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AOH [biosamplesummary="Homo sapiens HeLa-S3" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN728PEP|/analyses/ENCAN728PEP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF203MBP|/files/ENCFF203MBP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14506406 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF112SRH|/files/ENCFF112SRH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16167716 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF203MBP|/files/ENCFF203MBP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF203MBP|/files/ENCFF203MBP/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOH | float |
Histone_ChIP-seq_ENCSR000AOH |
Histone_ChIP-seq ENCSR000AOH [biosample_summary="Homo sapiens HeLa-S3" and target="H3K9ac"]
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[1.35, 171] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF723WDR.bed.gz | 964.82 KB | cee84fa1f78de5416de2caa2c87ca634 |
| ENCFF723WDR.bed.gz.dvc | 100.0 B | 45c230ceefdb4258e0cfc7893db60fa4 |
| ENCFF723WDR.tabix.bed.gz | 425.11 KB | ff28033ce27ec7bd29c7d61098db1116 |
| ENCFF723WDR.tabix.bed.gz.dvc | 106.0 B | 03bee72f91c49679d7c1d75b72030f63 |
| ENCFF723WDR.tabix.bed.gz.tbi | 164.22 KB | f7bf1406102eaa53f75ba150792153f6 |
| ENCFF723WDR.tabix.bed.gz.tbi.dvc | 110.0 B | 1124af156c9edb88b394c4bb81dc1405 |
| genomic_resource.yaml | 3.65 KB | 3fb2a493f58666a165e6aabf9ced43d1 |
| genomic_resource_original.yaml | 3.54 KB | d8adbb0a0df59e2dc7573106a9e528ae |
| statistics/ |