Resource
| Id | Histone_ChIP-seq/ENCSR000AOF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOF [biosample_summary="Homo sapiens HeLa-S3" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN862PXV|/analyses/ENCAN862PXV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF475KTC|/files/ENCFF475KTC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12319725 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF440OOW|/files/ENCFF440OOW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15819380 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOF | float |
Histone_ChIP-seq_ENCSR000AOF |
Histone_ChIP-seq ENCSR000AOF [biosample_summary="Homo sapiens HeLa-S3" and target="H3K4me3"]
|
 |
[1.56, 92.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52096725 | 1.62% | 38973 |
| chr1 | 5249027 | 2.11% | 3852 |
| chr2 | 3324263 | 1.37% | 2607 |
| chr3 | 2853617 | 1.44% | 2168 |
| chr4 | 1636167 | 0.86% | 1244 |
| chr5 | 2441895 | 1.35% | 1902 |
| chr6 | 2954351 | 1.73% | 2190 |
| chr7 | 2350198 | 1.47% | 1817 |
| chr8 | 2011388 | 1.39% | 1587 |
| chr9 | 2426400 | 1.75% | 1810 |
| chr10 | 2264139 | 1.69% | 1771 |
| chr11 | 2911245 | 2.16% | 2050 |
| chr12 | 2798051 | 2.10% | 1982 |
| chr13 | 929288 | 0.81% | 786 |
| chr14 | 1748025 | 1.63% | 1291 |
| chr15 | 1856408 | 1.82% | 1459 |
| chr16 | 2252068 | 2.49% | 1626 |
| chr17 | 3226511 | 3.88% | 2213 |
| chr18 | 943391 | 1.17% | 794 |
| chr19 | 3050157 | 5.20% | 2129 |
| chr20 | 1538332 | 2.39% | 1184 |
| chr21 | 648829 | 1.39% | 524 |
| chr22 | 1170193 | 2.30% | 869 |
| chrX | 1512155 | 0.97% | 1117 |
| chrY | 627 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38973 | 215 | 15937 | 1336.74 | 883 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF447CLK.bed.gz | 985.76 KB | e47bf43e33ee5116d8dc38b6e9dd8d52 |
| ENCFF447CLK.tabix.bed.gz | 432.47 KB | baff0af7f47d988974f7a7dfec5b4290 |
| ENCFF447CLK.tabix.bed.gz.tbi | 186.62 KB | 242313177b0aed47bb32f74b02972e65 |
| genomic_resource.yaml | 2.36 KB | 59274801258f8b92a29d5ca587a48bf6 |
| statistics/ |