Resource
| Id | Histone_ChIP-seq/ENCSR000AOC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AOC [biosample_summary="Homo sapiens HeLa-S3" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN226YPV|/analyses/ENCAN226YPV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF093KYN|/files/ENCFF093KYN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15726727 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF821BHR|/files/ENCFF821BHR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14828188 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AOC | float |
Histone_ChIP-seq_ENCSR000AOC |
Histone_ChIP-seq ENCSR000AOC [biosample_summary="Homo sapiens HeLa-S3" and target="H3K27ac"]
|
 |
[1.71, 198] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 63254690 | 1.97% | 50235 |
| chr1 | 6373282 | 2.56% | 4965 |
| chr2 | 4345821 | 1.79% | 3569 |
| chr3 | 3625960 | 1.83% | 2913 |
| chr4 | 2122037 | 1.12% | 1956 |
| chr5 | 2968168 | 1.64% | 2421 |
| chr6 | 3644207 | 2.13% | 2817 |
| chr7 | 2822014 | 1.77% | 2387 |
| chr8 | 2590547 | 1.78% | 2102 |
| chr9 | 2838828 | 2.05% | 2201 |
| chr10 | 3037711 | 2.27% | 2347 |
| chr11 | 3459442 | 2.56% | 2553 |
| chr12 | 3500486 | 2.63% | 2551 |
| chr13 | 1228710 | 1.07% | 1067 |
| chr14 | 2090466 | 1.95% | 1586 |
| chr15 | 2263730 | 2.22% | 1751 |
| chr16 | 2408556 | 2.67% | 1965 |
| chr17 | 3630841 | 4.36% | 2749 |
| chr18 | 1377767 | 1.71% | 1094 |
| chr19 | 2886033 | 4.92% | 2348 |
| chr20 | 1896891 | 2.94% | 1510 |
| chr21 | 922597 | 1.98% | 721 |
| chr22 | 1384013 | 2.72% | 1173 |
| chrX | 1836266 | 1.18% | 1488 |
| chrY | 317 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 50235 | 210 | 25394 | 1259.18 | 862 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF144EOJ.bed.gz | 1.26 MB | 82444d4680c2a376de429ca4a5b5dff9 |
| ENCFF144EOJ.tabix.bed.gz | 558.88 KB | e56f226f2be2992e25436fde8d82145c |
| ENCFF144EOJ.tabix.bed.gz.tbi | 199.21 KB | 3721d85b363f4daebf6b8d590e6245cc |
| genomic_resource.yaml | 2.36 KB | 2d6cb152a7c7ce161119335f10911136 |
| statistics/ |