Histone_ChIP-seq_ENCSR000ANZ
Histone_ChIP-seq ENCSR000ANZ [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR000ANZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANZ [biosamplesummary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN984FTN|/analyses/ENCAN984FTN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF031OJV|/files/ENCFF031OJV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7283193 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF463DMW|/files/ENCFF463DMW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10620713 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF463DMW|/files/ENCFF463DMW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF463DMW|/files/ENCFF463DMW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.25. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANZ | float |
Histone_ChIP-seq_ENCSR000ANZ |
Histone_ChIP-seq ENCSR000ANZ [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me3"]
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[1.61, 61.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF046FNE.bed.gz | 952.36 KB | 8ca5e2102c8440f917ba86c06c0b3177 |
| ENCFF046FNE.bed.gz.dvc | 100.0 B | dc16c93efd7a6c61ee0e985bd23ace1d |
| ENCFF046FNE.tabix.bed.gz | 413.13 KB | 87afd44d672ca4f18da5fab4c1918126 |
| ENCFF046FNE.tabix.bed.gz.dvc | 106.0 B | 53c8b0fd4c2c52857c55e9e82cc9f132 |
| ENCFF046FNE.tabix.bed.gz.tbi | 194.12 KB | 18b2415f6e632b12cfaed57de12fa467 |
| ENCFF046FNE.tabix.bed.gz.tbi.dvc | 110.0 B | e105b2289ad8963d3481062cb9629cb0 |
| genomic_resource.yaml | 3.74 KB | e80db59b24877192435f13c94afbb704 |
| genomic_resource_original.yaml | 3.6 KB | 4fba9ccd4f0a6438d38a4a16b2f9e4f2 |
| statistics/ |